https://cran.ms.unimelb.edu.au/web/packages/ldsep/index.html
CRAN: Package ldsep
Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyploids, using either genotypes or genotype likelihoods. Support is provided to...
cranpackage
https://www.r-project.org/nosvn/R.check/r-oldrel-windows-x86_64/ldsep-00check.html
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