rnastructuromedb - Robuta Search

https://structurome.bb.iastate.edu/download/rfam-bed-track-version-13 Rfam Bed Track (Version 13) | RNAStructuromeDB rfam bed track version https://structurome.bb.iastate.edu/download/segment-8-z-score-window-40-w-constraints Segment 8 z-score, window 40 w/ constraints | RNAStructuromeDB 100 randomizations, 40 window size, 1 step size, global refold, SHAPE constraints from: Dadonaite B, Gilbertson B, Knight ML, et al. The structure of the... z score segment window constraints https://structurome.bb.iastate.edu/faq Frequently Asked Questions | RNAStructuromeDB frequently asked questions https://structurome.bb.iastate.edu/download/segment-3-ed-window-40 Segment 3 ED, window 40 | RNAStructuromeDB 100 randomizations, 40 window size, 1 step size, global refold, no constraints. segment ed window https://structurome.bb.iastate.edu/download/bam23 BAM23 | RNAStructuromeDB https://structurome.bb.iastate.edu/download/segment-8-ed-window-60 Segment 8 ED, window 60 | RNAStructuromeDB 100 randomizations, 60 window size, 1 step size, global refold, no constraints. segment ed window https://structurome.bb.iastate.edu/download/segment-1-p-value-window-60 Segment 1 p-value, window 60 | RNAStructuromeDB 100 randomizations, 60 window size, 1 step size, global refold, no constraints. p value segment window https://structurome.bb.iastate.edu/download/segment-8-p-value-window-60-w-constraints Segment 8 p-value, window 60 w/ constraints | RNAStructuromeDB 100 randomizations, 60 window size, 1 step size, global refold, SHAPE constraints from: Dadonaite B, Gilbertson B, Knight ML, et al. The structure of the... p value segment window constraints https://structurome.bb.iastate.edu/download/segment-5-z-score-window-120-1 Segment 5 (-) z-score, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. Negative strand. z score segment window https://structurome.bb.iastate.edu/site-index/V Site Index | RNAStructuromeDB site index https://structurome.bb.iastate.edu/download/segment-5-ed-window-40 Segment 5 ED, window 40 | RNAStructuromeDB 100 randomizations, 40 window size, 1 step size, global refold, no constraints. segment ed window https://structurome.bb.iastate.edu/download/segment-7-fmfe-window-70-1 Segment 6 fMFE, window 70 | RNAStructuromeDB 100 randomizations, 70 window size, 1 step size, global refold, no constraints. segment window https://structurome.bb.iastate.edu/tools/ensemblerna EnsembleRNA | RNAStructuromeDB "A webpage for the visualization of RNA structural ensembles. A majority of RNAs adopt multiple conformations. All of the conformations that a single RNA may... https://structurome.bb.iastate.edu/site-index/U Site Index | RNAStructuromeDB site index https://structurome.bb.iastate.edu/download/segment-7-z-score-window-120-w-constraints Segment 7 z-score, window 120 w/ constraints | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, SHAPE constraints from: Dadonaite B, Gilbertson B, Knight ML, et al. The structure of the... z score segment window constraints https://structurome.bb.iastate.edu/download/rsvstrand-scanfold-scan-results RSV(+strand) ScanFold-Scan Results | RNAStructuromeDB ScanFold-Scan full results (window size 120nt, step size 1nt, randomizations 50 mononucleotide) scan results rsv strand https://structurome.bb.iastate.edu/site-index/K Site Index | RNAStructuromeDB site index https://structurome.bb.iastate.edu/download/segment-4-ed-window-60 Segment 4 ED, window 60 | RNAStructuromeDB 100 randomizations, 60 window size, 1 step size, global refold, no constraints. segment ed window https://structurome.bb.iastate.edu/download/bam18 BAM18 | RNAStructuromeDB https://structurome.bb.iastate.edu/download/segment-4-mfe-window-120-1 Segment 4 (-) MFE, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. Negative strand. segment mfe window https://structurome.bb.iastate.edu/download/bam20 BAM20 | RNAStructuromeDB https://structurome.bb.iastate.edu/download/segment-4-p-value-window-120-1 Segment 4 (-) p-value, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. Negative strand. p value segment window https://structurome.bb.iastate.edu/download/segment-7-z-score-window-40-w-constraints Segment 7 z-score, window 40 w/ constraints | RNAStructuromeDB 100 randomizations, 40 window size, 1 step size, global refold, SHAPE constraints from: Dadonaite B, Gilbertson B, Knight ML, et al. The structure of the... z score segment window constraints https://structurome.bb.iastate.edu/download/segment-5-mfe-window-70 Segment 5 MFE, window 70 | RNAStructuromeDB 100 randomizations, 70 window size, 1 step size, global refold, no constraints. segment mfe window https://structurome.bb.iastate.edu/download/segment-2-p-value-window-120 Segment 2 p-value, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. p value segment window https://structurome.bb.iastate.edu/download/segment-6-p-value-window-40 Segment 6 p-value, window 40 | RNAStructuromeDB 100 randomizations, 40 window size, 1 step size, global refold, no constraints. p value segment window https://structurome.bb.iastate.edu/download/segment-8-fmfe-window-60 Segment 8 fMFE, window 60 | RNAStructuromeDB 100 randomizations, 60 window size, 1 step size, global refold, no constraints. segment window https://structurome.bb.iastate.edu/download/segment-3-fmfe-window-120-2 Segment 3 (-) fMFE, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. Negative strand. segment window https://structurome.bb.iastate.edu/download/segment-3-fmfe-window-70-1 Segment 1 fMFE, window 70 | RNAStructuromeDB 100 randomizations, 70 window size, 1 step size, global refold, no constraints. segment window https://structurome.bb.iastate.edu/download/segment-8-p-value-window-120-0 Segment 8 (-) p-value, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. Negative strand. p value segment window https://structurome.bb.iastate.edu/download/segment-7-z-score-window-70-0 Segment 7 (-) z-score, window 70 | RNAStructuromeDB 100 randomizations, 70 window size, 1 step size, global refold, no constraints. Negative strand. z score segment window https://structurome.bb.iastate.edu/download/segment-3-p-value-window-120-0 Segment 3 p-value, window 120 | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, no constraints. p value segment window https://structurome.bb.iastate.edu/download/p-values-grch38-reverse-strand P-Values - GRCh38 - Reverse Strand | RNAStructuromeDB Fraction of scrambled sequences which were more stable (more negative MFE) than the native (genomic) sequence's MFE. p values reverse strand https://structurome.bb.iastate.edu/download/segment-2-fmfe-window-70-0 Segment 2 fMFE, window 70 | RNAStructuromeDB 100 randomizations, 70 window size, 1 step size, global refold, no constraints. segment window https://structurome.bb.iastate.edu/download/segment-8-z-score-window-120-w-constraints Segment 8 z-score, window 120 w/ constraints | RNAStructuromeDB 100 randomizations, 120 window size, 1 step size, global refold, SHAPE constraints from: Dadonaite B, Gilbertson B, Knight ML, et al. The structure of the... z score segment window constraints https://structurome.bb.iastate.edu/tools Tools | RNAStructuromeDB tools