https://pmc.ncbi.nlm.nih.gov/articles/PMC1838432/
Orthology prediction at scalable resolution by phylogenetic tree analysis - PMC
Orthology is one of the cornerstones of gene function prediction. Dividing the phylogenetic relations between genes into either orthologs or paralogs is...
phylogenetic treeorthologypredictionscalableresolution
https://pmc.ncbi.nlm.nih.gov/articles/PMC6298048/
SonicParanoid: fast, accurate and easy orthology inference - PMC
Orthology inference constitutes a common base of many genome-based studies, as a pre-requisite for annotating new genomes, finding target genes for...
sonicparanoidfastaccurateeasyorthology
https://pmc.ncbi.nlm.nih.gov/articles/PMC8138875/
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes - PMC
Insights into the evolution of ancestral complexes and pathways are generally achieved through careful and time-intensive manual analysis often using...
at the base
https://pmc.ncbi.nlm.nih.gov/articles/PMC9252809/
The Quest for Orthologs orthology benchmark service in 2022 - PMC
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by...
the questin 2022orthologsorthologybenchmark
https://pmc.ncbi.nlm.nih.gov/articles/PMC7892920/
Systematic errors in orthology inference and their effects on evolutionary analyses - PMC
The availability of complete sets of genes from many organisms makes it possible to identify genes unique to (or lost from) certain clades. This information is...
systematic errors
https://pmc.ncbi.nlm.nih.gov/articles/PMC5877793/
Functional and evolutionary implications of gene orthology - PMC
Orthologues and paralogues are types of homologous genes that are related by speciation or duplication, respectively. Orthologous genes are generally assumed...
gene orthologyfunctionalevolutionaryimplicationspmc
https://pmc.ncbi.nlm.nih.gov/articles/PMC3193375/
Orthology prediction methods: A quality assessment using curated protein families - PMC
The increasing number of sequenced genomes has prompted the development of several automated orthology prediction methods. Tests to evaluate the accuracy of...
a qualityprotein familiesorthologypredictionmethods