https://www.wur.nl/en/activity/genetic-variation-lettuce-pangenome
Genetic variation in the lettuce pangenome | WUR
PhD defence Dirk-Jan van Workum
genetic variationin thelettucepangenomewur
https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2025.1539151/full
Frontiers | Pangenome analysis indicates evolutionary origins and genetic diversity: emphasis on...
The Bradyrhizobium genus is widely known for encompassing many species capable of forming nodules and establishing the biological nitrogen fixation process w...
genetic diversityfrontierspangenomeanalysisevolutionary
https://github.com/codialab/panacus
GitHub - codialab/panacus: Panacus is a tool for computing statistics for GFA-formatted pangenome...
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs - codialab/panacus
is a
https://pmc.ncbi.nlm.nih.gov/articles/PMC12492951/
Beyond single references: pangenome graphs and the future of genomic medicine - PMC
Genomic medicine relies on single reference genomes that miss crucial genetic diversity, creating diagnostic gaps that disproportionately affect...
the future of
https://www.inrae.fr/en/news/first-rose-pangenome-identified
The first rose pangenome identified | INRAE
PRESS RELEASE - Over the course of five years, researchers sequenced 55,000 genes to produce the first rose pangenome. Coordinated by INRAE together with the...
the firstrosepangenomeidentifiedinrae
https://pmc.ncbi.nlm.nih.gov/articles/PMC12621775/
Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe - PMC
We previously introduced Giraffe, a short-read-to-pangenome graph mapper available in the vg pangenomics toolkit. Giraffe was fast and accurate for mapping...
https://www.latimes.com/science/story/2023-05-10/dna-reference-guide-expanded-to-reflect-human-diversity
'Pangenome,' a new DNA reference, will reflect human diversity - Los Angeles Times
May 10, 2023 - For two decades, scientists have been comparing every person's genetic blueprint they study to a template that relies mostly on just one man. That's about to...
a new
https://pmc.ncbi.nlm.nih.gov/articles/PMC10204317/
Graph construction method impacts variation representation and analyses in a bovine super-pangenome...
Several models and algorithms have been proposed to build pangenomes from multiple input assemblies, but their impact on variant representation, and...
https://elifesciences.org/articles/97870
The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific...
The accessory genome of Mycobacterium tuberculosis is small, but differences in gene content are found both between and within lineages.
https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/dragen-pangenome-reference-builder.html
DRAGEN Pangenome Reference Builder
DRAGEN Pangenome Reference Builder generates pangenome hash tables.
dragenpangenomereferencebuilder