16s rrna - Robuta Search

https://www.ncbi.nlm.nih.gov/nuccore/AB331652 Actinomadura bangladeshensis gene for 16S rRNA, partial sequence - Nucleotide - NCBI 16s rrna actinomadura gene partial sequence https://www.ncbi.nlm.nih.gov/nuccore/AB030911 Actinomycete Lp2 gene for 16S rRNA, partial sequence - Nucleotide - NCBI 16s rrna actinomycete lp2 gene partial https://www.ncbi.nlm.nih.gov/nuccore/X93193 D.matsuzakiense 16S rRNA gene - Nucleotide - NCBI 16s rrna gene nucleotide ncbi https://www.ncbi.nlm.nih.gov/nuccore/AB680174 Pseudomonas aeruginosa gene for 16S rRNA, partial sequence, strain: NB - Nucleotide - NCBI pseudomonas aeruginosa 16s rrna https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1403166/full Frontiers | Integrating microbial 16S rRNA sequencing and non-targeted metabolomics to reveal... The gut microbiome plays a key role in the formation of livestock and poultry traits via serum metabolites and empirical evidence has indicated these traits ... 16s rrna https://www.frontiersin.org/journals/urology/articles/10.3389/fruro.2023.1270509/full Frontiers | Cataloging variation in 16S rRNA gene sequences of female urobiome bacteria Continued efforts to isolate and sequence bacteria of the urinary tract has increased representation of these species in publicly available databases. This i... 16s rrna gene https://www.rch.org.au/specimen-collection/16S_rRNA_Gene_Nucleic_Acid_Detection/ Specimen Collection : 16S rRNA Gene Nucleic Acid Detection 16s rrna gene specimen collection nucleic acid detection https://www.ncbi.nlm.nih.gov/nuccore/AM410678 Mycetocola lacteus partial 16S rRNA gene, type strain DSM 15177 - Nucleotide - NCBI 16s rrna gene mycetocola lacteus https://pmc.ncbi.nlm.nih.gov/articles/PMC93175/ Quantitative Comparisons of 16S rRNA Gene Sequence Libraries from Environmental Samples - PMC To determine the significance of differences between clonal libraries of environmental rRNA gene sequences, differences between homologous coverage curves,... 16s rrna gene https://www.ncbi.nlm.nih.gov/nuccore/AJ577997 Amycolatopsis orientalis subsp. lurida 16S rRNA gene, strain DSM 43134 - Nucleotide - NCBI 16s rrna gene amycolatopsis orientalis https://www.ncbi.nlm.nih.gov/nuccore/AB680635 Paracoccus thiocyanatus gene for 16S rRNA, partial sequence, strain: N - Nucleotide - NCBI paracoccus thiocyanatus 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/AB364595 Actinomadura nitritigenes gene for 16S rRNA, partial sequence, strain: - Nucleotide - NCBI 16s rrna actinomadura gene https://www.ncbi.nlm.nih.gov/nuccore/AB072237 Paenibacillus koleovorans gene for 16S rRNA, partial sequence, strai: - Nucleotide - NCBI 16s rrna paenibacillus gene https://www.ncbi.nlm.nih.gov/nuccore/1417735315 Bacillus licheniformis partial 16S rRNA gene, strain BE484 - Nucleotide - NCBI 16s rrna gene bacillus licheniformis partial strain nucleotide https://www.gov.uk/government/publications/full-16s-rrna-gene-sequencing-of-bacteria-ba6237 Full 16S rRNA gene sequencing of bacteria (BA6237) - GOV.UK Submit samples for full 16S rRNA genetic sequencing of bacteria for high-resolution identification and taxonomic placement. 16s rrna gene full sequencing bacteria uk https://www.ncbi.nlm.nih.gov/nuccore/AB680695 Flavobacterium succinicans gene for 16S rRNA, partial sequence, strain - Nucleotide - NCBI 16s rrna flavobacterium gene https://www.ncbi.nlm.nih.gov/nuccore/AJ415378 Brachybacterium fresconis partial 16S rRNA gene, type strain LMG 20336 - Nucleotide - NCBI 16s rrna gene brachybacterium fresconis https://pmc.ncbi.nlm.nih.gov/articles/PMC4178620/ Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles - PMC Massively parallel sequencing of 16S rRNA genes enables the comparison of terrestrial, aquatic, and host-associated microbial communities with sufficient... 16s rrna gene evaluating bias illumina based https://pmc.ncbi.nlm.nih.gov/articles/PMC6984327/ Integrated 16S rRNA Sequencing, Metagenomics, and Metabolomics to Characterize Gut Microbial... Type 2 diabetes mellitus (T2DM) is one of the most prevalent endocrine diseases in the world. Recent studies have shown that dysbiosis of the gut microbiota... 16s rrna integrated sequencing metagenomics https://www.ncbi.nlm.nih.gov/nuccore/AJ243751 Sphingomonas pituitosa partial 16S rRNA gene, strain EDIV - Nucleotide - NCBI 16s rrna gene sphingomonas pituitosa partial strain nucleotide https://www.ncbi.nlm.nih.gov/nuccore/LC147065 Panthera uncia mitochondrial gene for 16S rRNA, partial sequence - Nucleotide - NCBI panthera uncia mitochondrial gene 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/AB041720 Paenibacillus sp. TB gene for 16S rRNA, partial sequence - Nucleotide - NCBI 16s rrna paenibacillus sp tb gene https://www.ncbi.nlm.nih.gov/nuccore/1417735316 Bacillus licheniformis partial 16S rRNA gene, strain BE498 - Nucleotide - NCBI 16s rrna gene bacillus licheniformis partial strain nucleotide https://pmc.ncbi.nlm.nih.gov/articles/PMC12077174/ Evaluation of long-read 16S rRNA next-generation sequencing for identification of bacterial... Sanger sequencing of the first ~500 bp of the 16S rRNA gene is frequently used to identify bacterial pathogens that have ambiguous biochemical profiles or... next generation sequencing long read 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/LC147067 Equus caballus mitochondrial gene for 16S rRNA, partial sequence - Nucleotide - NCBI equus caballus mitochondrial gene 16s rrna https://pmc.ncbi.nlm.nih.gov/articles/PMC2566877/ Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers -... The recent introduction of massively parallel pyrosequencers allows rapid, inexpensive analysis of microbial community composition using 16S ribosomal RNA... 16s rrna https://www.ncbi.nlm.nih.gov/nucleotide/AM709724 Mycobacterium intracellulare partial 16S rRNA gene, partial 23S rRNA g - Nucleotide - NCBI 16s rrna gene mycobacterium intracellulare partial 23s nucleotide https://www.ncbi.nlm.nih.gov/nuccore/D16281 Bacillus thuringiensis gene for 16S rRNA, partial sequence, strain: IA - Nucleotide - NCBI bacillus thuringiensis 16s rrna https://pmc.ncbi.nlm.nih.gov/articles/PMC7484979/ Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of... This review provides a state-of-the-art description of the performance of Sanger cycle sequencing of the 16S rRNA gene for routine identification of bacteria... 16s rrna gene https://www.mdpi.com/2076-2607/11/3/803 16S-rRNA-Based Metagenomic Profiling of the Bacterial Communities in Traditional Bulgarian... Sourdoughs (SDs) are spontaneously formed microbial ecosystems composed of various species of lactic acid bacteria (LAB) and acid-tolerant yeasts in food... 16s rrna of the https://www.ncbi.nlm.nih.gov/nuccore/AB184328 Streptomyces bobili gene for 16S rRNA, partial sequence, strain: NBRC - Nucleotide - NCBI streptomyces bobili 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/LC147066 Camelus bactrianus mitochondrial gene for 16S rRNA, partial sequence - Nucleotide - NCBI camelus bactrianus mitochondrial gene 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/LT009499 Roseomonas rubra partial 16S rRNA gene, type strain S5T - Nucleotide - NCBI 16s rrna gene roseomonas rubra type strain partial https://pmc.ncbi.nlm.nih.gov/articles/PMC8544895/ Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing - PMC Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies investigating microbiomes. However, comparative studies on differences in... 16s rrna gene primer pipelines parameters issues https://www.ncbi.nlm.nih.gov/nuccore/AB681885 Azotobacter salinestris gene for 16S rRNA, partial sequence, strain: N - Nucleotide - NCBI azotobacter salinestris 16s rrna https://www.ncbi.nlm.nih.gov/nuccore/X53167 Streptoverticillium ladakanum var. ladakanum partial 16S rRNA - Nucleotide - NCBI streptoverticillium ladakanum 16s rrna var partial nucleotide https://www.ncbi.nlm.nih.gov/nuccore/X79290 D.maris (DSM 43672) 16S rRNA gene - Nucleotide - NCBI 16s rrna gene d maris dsm nucleotide ncbi https://www.ncbi.nlm.nih.gov/protein/WP_001296139.1 MULTISPECIES: 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF [E - Protein - NCBI 16s rrna c 5 https://www.ncbi.nlm.nih.gov/nuccore/HG316990 Desulfosporosinus acididurans partial 16S rRNA gene, strain M1 - Nucleotide - NCBI 16s rrna gene desulfosporosinus partial strain m1 https://www.ncbi.nlm.nih.gov/protein/WP_001704100.1 MULTISPECIES: 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF [E - Protein - NCBI 16s rrna c 5 https://www.ncbi.nlm.nih.gov/Structure/pdb/3MQ2 3MQ2: Crystal Structure of 16S rRNA Methyltranferase KamB 16S rRNA methyltransferaseS-ADENOSYL-L-HOMOCYSTEINE crystal structure 16s rrna kamb https://www.ncbi.nlm.nih.gov/nuccore/AB548577 Citrobacter freundii gene for 16S rRNA, partial sequence, strain: JCM - Nucleotide - NCBI citrobacter freundii 16s rrna https://pmc.ncbi.nlm.nih.gov/articles/PMC7524321/ 16S rRNA sequencing analysis: the devil is in the details - PMC User-friendly computational tools for 16S ribosomal RNA (rRNA) sequencing analysis enable researchers who are not bioinformaticians to analyze and interpret... 16s rrna the devil is in sequencing analysis https://pmc.ncbi.nlm.nih.gov/articles/PMC4417478/ Using DGGE and 16S rRNA Gene Sequence Analysis to Evaluate Changes in Oral Bacterial Composition -... To investigate whether a standard dental prophylaxis followed by tooth brushing with an antibacterial dentifrice will affect the oral bacterial community, as... https://www.ncbi.nlm.nih.gov/gene/950245 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase [Haemophilus influenzae Rd KW20] - Gene - NCBI https://www.rcsb.org/structure/5EOV RCSB PDB - 5EOV: C-terminal domain of the 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. C-terminal domain of the 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. https://pmc.ncbi.nlm.nih.gov/articles/PMC4433096/ The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies - PMC Characterizing microbial communities via next-generation sequencing is subject to a number of pitfalls involving sample processing. The observed community... the truth about https://www.ncbi.nlm.nih.gov/nuccore/LC800117 Lentilactobacillus sp. JCM 2768 gene for 16S rRNA, partial sequence - Nucleotide - NCBI https://pmc.ncbi.nlm.nih.gov/articles/PMC52135/ Mutations in 16S rRNA that affect UGA (stop codon)-directed translation termination - PMC Site-directed mutagenesis was performed on a sequence motif within the 3' major domain of Escherichia coli 16S rRNA shown previously to be important for... https://pmc.ncbi.nlm.nih.gov/articles/PMC12480654/ Comparative analysis of illumina and oxford nanopore sequencing platforms for 16S rRNA profiling of... The respiratory microbiome plays a crucial role in health and disease, necessitating accurate characterization through high-throughput sequencing technologies.... https://pmc.ncbi.nlm.nih.gov/articles/PMC11162379/ Quantifying variation across 16S rRNA gene sequencing runs in human microbiome studies - PMC Recent microbiome research has incorporated a higher number of samples through more participants in a study, longitudinal studies, and metanalysis between... 16s rrna gene https://pmc.ncbi.nlm.nih.gov/articles/PMC4590409/ Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: application to oral carcinoma... Usefulness of next-generation sequencing (NGS) in assessing bacteria associated with oral squamous cell carcinoma (OSCC) has been undermined by inability to... https://www.scielo.org.mx/scielo.php?script=sci_arttext&pid=S1870-34532010000400012&lng=es&nrm=iso&tlng=en Unique 16S rRNA sequences of Eurythenes gryllus (Crustacea: Amphipoda: Lysianassidae) from the Gulf... https://www.ncbi.nlm.nih.gov/nuccore/EU247891 Meiothermus cateniformans strain LY1 16S ribosomal RNA (rrnA) gene, pa - Nucleotide - NCBI 16s ribosomal rna https://pmc.ncbi.nlm.nih.gov/articles/PMC6550369/ Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments - PMC The relative scarcity of microbes in low-microbial-biomass environments makes accurate determination of community composition challenging. Identifying and... 16s rrna gene https://elifesciences.org/reviewed-preprints/110251 The overall and sequence-specific degradation of soil extracellular 16S rRNA genes across China:... https://www.mdpi.com/2073-4441/17/11/1575 Identification of Bacterial Communities in Surface Waters of Rio Bravo/Rio Grande Through 16S rRNA... The Rio Bravo/Grande River is a binational water resource between Mexico and the United States and supports diverse anthropogenic activities. However, limited... https://www.preprints.org/manuscript/202507.0289 Title Detection of Pathogens by a Novel User-Developed Broad-Range BR 16S PCR rRNA Polymerase Chain... Between 2015 and 2022, we evaluated a novel BR 16S PCR rDNA PCR/Sanger sequencing assay to improve diagnosis of invasive infections in culture-negative... https://pmc.ncbi.nlm.nih.gov/articles/PMC12570451/ Creating unity: linking 16S rRNA gene sequence information to the core taxonomy of genomes - PMC The Genome Taxonomy Database (GTDB) initiative aims to modernize prokaryotic taxonomy by aligning it with the great amounts of full-length genomes available... https://pmc.ncbi.nlm.nih.gov/articles/PMC1317340/ PCR-Induced Sequence Artifacts and Bias: Insights from Comparison of Two 16S rRNA Clone Libraries... The contribution of PCR artifacts to 16S rRNA gene sequence diversity from a complex bacterioplankton sample was estimated. Taq DNA polymerase errors were... https://pmc.ncbi.nlm.nih.gov/articles/PMC10980831/ Taxonomic resolution of different 16S rRNA variable regions varies strongly across plant-associated... Plant-microbiome research plays a pivotal role in understanding the relationships between plants and their associated microbial communities, with implications... https://pmc.ncbi.nlm.nih.gov/articles/PMC12465504/ Comparison of the microbiome of sputum from HIV/AIDS patients using PacBio 16S rRNA sequencing and... Pulmonary infections are prevalent opportunistic complications among HIV/AIDS patients, necessitating precise pathogen identification for targeted treatment.... https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2021.663210/full Frontiers | Prevalence of 16S rRNA Methylation Enzyme Gene armA in Salmonella From Outpatients and... Salmonella is the primary cause of community-acquired foodborne infections, so its resistance to antimicrobials, such as aminoglycosides, is a public health ... https://pmc.ncbi.nlm.nih.gov/articles/PMC5857167/ Careful use of 16S rRNA gene sequence similarity values for the identification of Mycobacterium... In order to evaluate the suitability of 16S rRNA nucleotide sequence similarity for the classification of new Mycobacterium isolates at the species level, we... 16s rrna gene https://www.prnewswire.com/news-releases/teams-at-venter-institute-and-synthetic-genomics-inc-successfully-engineer-16s-rrna-using-one-step-process-combining-crisprcas9-systems-and-yeast-recombination-machinery-300309101.html Teams at Venter Institute and Synthetic Genomics, Inc. Successfully Engineer 16S rRNA using One... /PRNewswire/ -- Researchers from the J. Craig Venter Institute (JCVI) and Synthetic Genomics, Inc. (SGI) have published research describing a method for... https://www.ncbi.nlm.nih.gov/protein/5EOV_A Chain A, 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA - Protein - NCBI 23s rrna https://pmc.ncbi.nlm.nih.gov/articles/PMC12095030/ micRoclean: an R package for decontaminating low-biomass 16S-rRNA microbiome data - PMC In 16S-rRNA microbiome studies, cross-contamination and environmental contamination can obscure true biological signal. This contamination is particularly... https://pmc.ncbi.nlm.nih.gov/articles/PMC7602188/ Advantages and Limitations of 16S rRNA Next-Generation Sequencing for Pathogen Identification in... Bacterial culture and biochemical testing (CBtest) have been the cornerstone of pathogen identification in the diagnostic microbiology laboratory. With the... next generation sequencing https://pmc.ncbi.nlm.nih.gov/articles/PMC2045242/ 16S rRNA Gene Sequencing for Bacterial Identification in the Diagnostic Laboratory: Pluses, Perils,... 16s rrna gene https://www.ncbi.nlm.nih.gov/Structure/pdb/3FUU 3FUU: T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with Adenosine... Dimethyladenosine transferaseADENOSINE https://pmc.ncbi.nlm.nih.gov/articles/PMC6765137/ High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide... Targeted PCR amplification and high-throughput sequencing (amplicon sequencing) of 16S rRNA gene fragments is widely used to profile microbial communities. New... https://pmc.ncbi.nlm.nih.gov/articles/PMC3237409/ Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies - PMC The advent of next generation sequencing has coincided with a growth in interest in using these approaches to better understand the role of the structure and...