Robuta

https://portal.fis.tum.de/en/publications/ioncopy-a-novel-method-for-calling-copy-number-alterations-in-amp/ Ioncopy: A novel method for calling copy number alterations in amplicon sequencing data including... https://publications-cnrc.canada.ca/eng/view/object/?id=c86e4cf6-dd6e-4f7d-9e68-798c921115aa Systematic processing of ribosomal RNA gene amplicon sequencing data - NRC Publications Archive -... Systematic processing of ribosomal RNA gene amplicon sequencing data https://bibliographie.uni-tuebingen.de/xmlui/handle/10900/105734 Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of... https://publikationen.uni-tuebingen.de/xmlui/handle/10900/98930 Rapid, low cost and sensitive detection of Calreticulin mutations by a PCR based amplicon length... https://pmc.ncbi.nlm.nih.gov/articles/PMC4830092/ Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing - PMC The human microbiome has emerged as a major player in regulating human health and disease. Translation studies of the microbiome have the potential to indicate... https://digitalcommons.unl.edu/bioscifacpub/690/ "High-Throughput Amplicon Sequencing of rRNA Genes Requires a Copy Numb" by B. J. Darby, T. C. Todd... Nematodes are abundant consumers in grassland soils, but more sensitive and specific methods of enumeration are needed to improve our understanding of how... https://pubmed.ncbi.nlm.nih.gov/25690897/ Accurate multiplexing and filtering for high-throughput amplicon-sequencing Tagging amplicons with tag sequences appended to PCR primers allow the multiplexing of numerous samples for high-throughput sequencing (HTS). This approach is... high throughputaccuratemultiplexingfilteringamplicon https://pubmed.ncbi.nlm.nih.gov/33080972/ Use of Targeted Amplicon Sequencing in Peanut to Generate Allele Information on Allotetraploid... The use of molecular markers in plant breeding has become a routine practice, but the cost per accession can be a hindrance to the routine use of Quantitative... https://pmc.ncbi.nlm.nih.gov/articles/PMC11462149/ High accuracy meets high throughput for near full-length 16S ribosomal RNA amplicon sequencing on... Small subunit (SSU) ribosomal RNA (rRNA) gene amplicon sequencing is a foundational method in microbial ecology. Currently, short-read platforms are commonly... https://publikationen.uni-tuebingen.de/xmlui/handle/10900/105734?show=full Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of... https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0306503 Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome... The North Railroad Avenue Plume (NRAP) Superfund site in New Mexico, USA exemplifies successful chlorinated solvent bioremediation. NRAP was the result of... https://science.nasa.gov/biological-physical/data/osdr/amplicon-sequencing/ Amplicon Sequencing - NASA Science Oct 6, 2025 - Amplicon sequencing is a targeted sequencing technique that uses specific primers to target and amplify specific genes or gene fragments from isolated DNA or amplicon sequencingnasascience https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0264443 Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger... Advances in the analysis of amplicon sequence datasets have introduced a methodological shift in how research teams investigate microbial biodiversity, away... https://www.mdpi.com/2076-3417/12/3/1136 Optimization of Protocol for Construction of Fungal ITS Amplicon Library for High-Throughput... High-Throughput Illumina Sequencing (HTS) can be used to study metagenomes, for example, those of importance for plant health. However, protocols must be... for constructionoptimizationprotocol https://github.com/iobis/pacman-pipeline GitHub - iobis/PacMAN-pipeline: Bioinformatics pipeline for the analysis of amplicon sequencing... Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project - iobis/PacMAN-pipeline for thegithubpacmanpipelinebioinformatics https://manpages.ubuntu.com/manpages/xenial/man3/Grinder.3pm.html Ubuntu Manpage: Grinder - A versatile omics shotgun and amplicon sequencing read simulator A versatile omics shotgun and amplicon sequencing read simulator https://scholars.uky.edu/es/publications/targeted-amplicon-sequencing-of-40-nuclear-genes-supports-a-singl/ Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation... https://www.mdpi.com/2076-2607/11/3/757 Revived Amplicon Sequence Variants Monitoring in Closed Systems Identifies More Dormant... The large number of dormant microorganisms present in the environment is an important component of microbial diversity, and neglecting dormant microorganisms... closed systemsrevivedampliconsequencevariants https://www.frontiersin.org/journals/agronomy/articles/10.3389/fagro.2024.1397974/full Frontiers | Amplicon-based metagenomics to study the effect of coir age and wood biochar on... In the UK, strawberry is mostly grown in coconut coir-substrate under protection. Coir substrate is usually used only for one or two cropping seasons, becaus... https://data.mendeley.com/datasets/z7spt94d2w/2 Data for: establishment and assessment of an amplicon sequencing method targeting the amoA gene for... The template and taxonomic files of amoA gene of ammonia-oxidizing bacteria for processing the high throughput sequencing data with the MOTHUR. https://scholars.duke.edu/publication/695144 Scholars@Duke publication: Mapping and characterization of the amplicon near APOA2 in 1q23 in human... https://experts.colorado.edu/display/pubid_273381 Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods... https://pmc.ncbi.nlm.nih.gov/articles/PMC10634443/ Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling,... 16S rRNA gene sequencing is widely used to characterize human and environmental microbiomes. Sequencing at scale facilitates better powered studies but is... https://data.mendeley.com/datasets/scxbt4nbtx/1 Hidden Plasmodium Diversity revealed in southeastern Asian passerines using Amplicon Sequencing -... Monitoring haemosporidian (Genus: Plasmodium) infections in passerine birds is essential for understanding the intricate dynamics of avian malaria and its... hiddenplasmodiumdiversityrevealed https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093827 Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial... This study explored the short-term planktonic microbial community structure and resilience in Lake Lanier (GA, USA) while simultaneously evaluating the... https://researchconnect.buffalo.edu/en/publications/esprit-forest-parallel-clustering-of-massive-amplicon-sequence-da/ ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time - SUNY... https://research.vu.nl/en/publications/limited-added-value-of-fungal-its-amplicon-sequencing-in-the-stud/ Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion - Vrije... https://tobias-lib.ub.uni-tuebingen.de/xmlui/handle/10900/102313 Amplicon-based microbiome study highlights the loss of diversity and the establishment of a set of... https://udspace.udel.edu/items/d88f184a-bbac-4bcb-b67e-ed7894cf94b5 ThermoAlign: a genome-aware primer design tool for tiled amplicon resequencing Isolating and sequencing specific regions in a genome is a cornerstone of molecular biology. This has been facilitated by computationally encoding the... primer designgenomeaware https://nij.ojp.gov/library/publications/application-amplicon-length-heterogeneity-pcr-lh-pcr-monitoring-dynamics-soil The Application of Amplicon Length Heterogeneity PCR (LH-PCR) for Monitoring the Dynamics of Soil... Since the placement of cadavers in shallow, clandestine graves may alter the microbial and geochemical composition of the underlying and adjacent soils, the... the application https://edrn.cancer.gov/data-and-resources/publications/10728696-1879-a-minimal-critical-region-of-the-8p22-23-amplicon-in-esophageal-adenocarcinomas-defined-using-sequence-tagged-site-amplification-mapping-and-quantitative-polymerase-chain-reaction-includes-the-gata-4-gene/ A minimal critical region of the 8p22-23 amplicon in esophageal adenocarcinomas defined using... This is a publication by a member of the Early Detection Research Network. https://pmc.ncbi.nlm.nih.gov/articles/PMC6765137/ High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide... Targeted PCR amplification and high-throughput sequencing (amplicon sequencing) of 16S rRNA gene fragments is widely used to profile microbial communities. New... https://dna.uga.edu/microbiome-service/ Microbiome/Amplicon Service - GGBC microbiomeampliconservice https://pubmed.ncbi.nlm.nih.gov/23793624/ Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon... Rapid advances in sequencing technology have changed the experimental landscape of microbial ecology. In the last 10 years, the field has moved from sequencing... https://researchconnect.buffalo.edu/en/publications/efficacy-of-multiagent-herpes-simplex-virus-amplicon-mediated-imm/ Efficacy of multiagent herpes simplex virus amplicon-mediated immunotherapy as adjuvant treatment... herpes simplex virus https://pmc.ncbi.nlm.nih.gov/articles/PMC7032056/ Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of... This paper presents the performance of two eukaryotic genomic ribosomal regions, ITS1 and ITS2, in describing fungal diversity in aerosol samples using...