Robuta

https://www.bioconductor.org/ Bioconductor - Home The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html Bioconductor - Rgraphviz The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorrgraphviz https://www.bioconductor.org/packages/release/bioc/html/graph.html Bioconductor - graph The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorgraph https://www.bioconductor.org/packages/release/data/experiment/html/systemPipeRdata.html Bioconductor - systemPipeRdata The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorsystempiperdata https://bioconductor.org/ Bioconductor - Home The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.org/help/search/index.html?q=%22mixed+models%22/ Bioconductor - Search The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorsearch https://www.bioconductor.org/packages/release/bioc/html/waddR.html Bioconductor - waddR The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/bioc/html/cypress.html Bioconductor - cypress The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorcypress https://bioconductor.org/books/3.14/OSCA.advanced/interactive-sharing.html Chapter 13 Interactive data exploration | Advanced Single-Cell Analysis with Bioconductor Chapter 13 Interactive data exploration | Advanced Single-Cell Analysis with Bioconductor single cell analysisinteractive datachapterexploration https://www.bioconductor.org/packages/release/bioc/html/GeneticsPed.html Bioconductor - GeneticsPed The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.4/data/annotation/html/ragene20sttranscriptcluster.db.html Bioconductor - ragene20sttranscriptcluster.db Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) assembled using data from public repositories bioconductordb https://www.bioconductor.org/packages/release/data/annotation/html/clariomsmousetranscriptcluster.db.html Bioconductor - clariomsmousetranscriptcluster.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://bioconductor.statistik.tu-dortmund.de/packages/3.12/bioc/html/methylInheritance.html Bioconductor - methylInheritance Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between... bioconductor https://www.bioconductor.org/packages/release/bioc/html/sigsquared.html Bioconductor - sigsquared The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://dev.status.bioconductor.org/issues/2026-05-05-00-10-33_bioconductor_code_browser/ (Auto-detected) Bioconductor Code Browser Down | Bioconductor Status 2026-05-05-00-10-33 (Auto-detected) Bioconductor Code Browser Down code browserautodetectedbioconductorstatus https://www.bioconductor.org/packages/release/data/annotation/html/hugene11stprobeset.db.html Bioconductor - hugene11stprobeset.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://www.bioconductor.org/packages/release/bioc/html/HiCDCPlus.html Bioconductor - HiCDCPlus The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/help/course-materials/2015/Uruguay2015/ Bioconductor - R Bio: Untangling Genomes The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductoruntanglinggenomes https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002276 BeadArray Expression Analysis Using Bioconductor | PLOS Computational Biology Illumina whole-genome expression BeadArrays are a popular choice in gene profiling studies. Aside from the vendor-provided software tools for analyzing... expressionanalysisusingbioconductorplos https://bioconductor.statistik.tu-dortmund.de/packages/3.12/data/experiment/html/benchmarkfdrData2019.html Bioconductor - benchmarkfdrData2019 Benchmarking results for experimental and simulated data sets used in Korthauer and Kimes et al. (2019) to compare methods for controlling the false discovery... bioconductor https://www.bioconductor.org/packages/release/bioc/html/SNPRelate.html Bioconductor - SNPRelate The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/bioc/html/GeneNetworkBuilder.html Bioconductor - GeneNetworkBuilder The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://anaconda.org/bioconda/bioconductor-lmgene/files?channel=main&page=2&sort=length&sort_order=desc&version=2.40.0 bioconductor-lmgene - bioconda | Anaconda.org Install bioconductor-lmgene with Anaconda.org. LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression... bioconductorbiocondaanaconda https://bioconductor.statistik.tu-dortmund.de/packages/3.16/bioc/html/projectR.html Bioconductor - projectR Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering. bioconductorprojectr https://bioconductor.statistik.tu-dortmund.de/packages/3.17/bioc/html/appreci8R.html Bioconductor - appreci8R The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.17/data/experiment/html/chipenrich.data.html Bioconductor - chipenrich.data Supporting data for the chipenrich package. Includes pre-defined gene sets, gene locus definitions, and mappability estimates. bioconductordata https://www.bioconductor.org/packages/release/data/annotation/html/ragene21sttranscriptcluster.db.html Bioconductor - ragene21sttranscriptcluster.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://dev.status.bioconductor.org/issues/2026-04-17-15-32-43_bioconductor_code_browser/ (Auto-detected) Bioconductor Code Browser Down | Bioconductor Status 2026-04-17-15-32-43 (Auto-detected) Bioconductor Code Browser Down code browserautodetectedbioconductorstatus https://www.bioconductor.org/packages/release/data/annotation/html/hgug4112a.db.html Bioconductor - hgug4112a.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://deepwiki.com/dence/snakemake_pipeline_kallisto_deseq2/4.1-r-and-bioconductor-environments R and Bioconductor Environments | dence/snakemake_pipeline_kallisto_deseq2 | DeepWiki This page documents the R and Bioconductor environments used in the Snakemake pipeline for statistical analysis and differential expression workflows. The... rsnakemakepipelinekallistodeepwiki https://dev.status.bioconductor.org/issues/2026-04-16-04-53-51_bioconductor_code_browser/ (Auto-detected) Bioconductor Code Browser Down | Bioconductor Status 2026-04-16-04-53-51 (Auto-detected) Bioconductor Code Browser Down code browserautodetectedbioconductorstatus https://dev.status.bioconductor.org/issues/2026-05-01-05-17-50_archive/ (Auto-detected) Bioconductor AnnotationHub Resource Endpoint Down | Bioconductor Status 2026-05-01-05-17-50 (Auto-detected) Bioconductor AnnotationHub Resource Endpoint Down autodetectedbioconductorannotationhubresource https://www.bioconductor.org/packages/release/bioc/html/markeR.html Bioconductor - markeR The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductormarker https://bioconductor.statistik.tu-dortmund.de/packages/3.12/bioc/html/gdsfmt.html Bioconductor - gdsfmt Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store... bioconductor https://www.bioconductor.org/packages/release/data/annotation/html/rguatlas4k.db.html Bioconductor - rguatlas4k.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://bioconductor.statistik.tu-dortmund.de/packages/3.8/bioc/html/HDF5Array.html Bioconductor - HDF5Array Implements the HDF5Array and TENxMatrix classes, 2 convenient and memory-efficient array-like containers for on-disk representation of HDF5 datasets. HDF5Array... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/2.10/bioc/html/cellHTS2.html Bioconductor - cellHTS2 bioconductor https://rdrr.io/bioc/rain/ rain: Rhythmicity Analysis Incorporating Non-parametric Methods version 1.24.0 from Bioconductor This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising... https://bioconductor.statistik.tu-dortmund.de/packages/3.15/data/annotation/html/illuminaHumanv1.db.html Bioconductor - illuminaHumanv1.db Illumina HumanWG6v1 annotation data (chip illuminaHumanv1) assembled using data from public repositories bioconductordb https://www.bioconductor.org/packages/release/bioc/html/GeneOverlap.html Bioconductor - GeneOverlap The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://anaconda.org/bioconda/bioconductor-lmgene/files?channel=main&page=1&sort=ndownloads&sort_order=asc&version=2.40.0 bioconductor-lmgene - bioconda | Anaconda.org Install bioconductor-lmgene with Anaconda.org. LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression... bioconductorbiocondaanaconda https://bioconductor.statistik.tu-dortmund.de/packages/3.4/data/annotation/html/hgu133b.db.html Bioconductor - hgu133b.db Affymetrix Human Genome U133 Set annotation data (chip hgu133b) assembled using data from public repositories bioconductordb https://bioconductor.statistik.tu-dortmund.de/packages/3.7/bioc/html/TIN.html Bioconductor - TIN The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the... bioconductortin https://www.bioconductor.org/packages/release/data/annotation/html/porcine.db.html Bioconductor - porcine.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorporcinedb https://anaconda.org/bioconda/bioconductor-lola/files?page=1&sort=length&sort_order=desc&type=conda&version=1.10.0 bioconductor-lola - bioconda | Anaconda.org Install bioconductor-lola with Anaconda.org. Locus overlap analysis for enrichment of genomic ranges bioconductorlolabiocondaanaconda https://bioconductor.statistik.tu-dortmund.de/packages/3.11/bioc/html/rrvgo.html Bioconductor - rrvgo Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity. bioconductor https://www.bioconductor.org/packages/release/data/annotation/html/mu11ksubb.db.html Bioconductor - mu11ksubb.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://www.bioconductor.org/packages/release/data/experiment/html/ConnectivityMap.html Bioconductor - ConnectivityMap The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.7/bioc/html/scPipe.html Bioconductor - scPipe A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control... bioconductor https://dev.status.bioconductor.org/issues/2025-12-20-02-53-25_bioconductor_code_search/ (Auto-detected) Bioconductor Code Search Down | Bioconductor Status 2025-12-20-02-53-25 (Auto-detected) Bioconductor Code Search Down code searchautodetectedbioconductorstatus https://www.bioconductor.org/packages/release/bioc/html/RTCGA.html Bioconductor - RTCGA The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.15/data/annotation/html/ecoliSakai.db0.html Bioconductor - ecoliSakai.db0 Base annotation databases for E coli Sakai Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.15/data/annotation/html/hgug4101a.db.html Bioconductor - hgug4101a.db Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories bioconductordb https://www.bioconductor.org/packages/release/bioc/html/MCbiclust.html Bioconductor - MCbiclust The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.4/data/experiment/html/GSVAdata.html Bioconductor - GSVAdata This package stores the data employed in the vignette of the GSVA package. These data belong to the following publications: Armstrong et al. Nat Genet... bioconductor https://www.bioconductor.org/packages/release/bioc/html/miRBaseConverter.html Bioconductor - miRBaseConverter The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/bioc/html/cpvSNP.html Bioconductor - cpvSNP The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.17/bioc/html/GDCRNATools.html Bioconductor - GDCRNATools This is an easy-to-use package for downloading, organizing, and integrative analyzing RNA expression data in GDC with an emphasis on deciphering the... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.8/data/annotation/html/org.Dm.eg.db.html Bioconductor - org.Dm.eg.db Genome wide annotation for Fly, primarily based on mapping using Entrez Gene identifiers. bioconductordmegdb https://www.bioconductor.org/packages/release/data/annotation/html/clariomsrathttranscriptcluster.db.html Bioconductor - clariomsrathttranscriptcluster.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://www.bioconductor.org/help/publications/ Bioconductor - Publications The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorpublications https://bioconductor.org/help/faq/ Bioconductor - FAQ The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorfaq https://www.bioconductor.org/help/course-materials/2018/BioC2018/ Bioconductor - BioC2018 The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.12/workflows/html/sequencing.html Bioconductor - sequencing Bioconductor enables the analysis and comprehension of high- throughput genomic data. We have a vast number of packages that allow rigorous statistical... bioconductorsequencing https://rdrr.io/bioc/ProteomicsAnnotationHubData/ ProteomicsAnnotationHubData: Transform public proteomics data resources into Bioconductor Data... These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures. data resourcestransformpublicproteomicsbioconductor https://www.bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html Bioconductor - SummarizedExperiment The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/help/course-materials/2014/SeattleOct2014/A01.2_IntroductionToBioconductor.html Introduction to Bioconductor introductionbioconductor https://www.bioconductor.org/packages/release/bioc/html/Spaniel.html Bioconductor - Spaniel The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorspaniel https://bioconductor.statistik.tu-dortmund.de/packages/3.8/bioc/html/deepSNV.html Bioconductor - deepSNV bioconductor https://www.bioconductor.org/packages/release/bioc/html/MSnID.html Bioconductor - MSnID The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.17/bioc/html/chipenrich.html Bioconductor - chipenrich ChIP-Enrich and Poly-Enrich perform gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.4/bioc/html/Rtreemix.html Bioconductor - Rtreemix Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various... bioconductor https://www.bioconductor.org/packages/release/bioc/html/SpaceMarkers.html Bioconductor - SpaceMarkers The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorspacemarkers https://bioconductor.statistik.tu-dortmund.de/packages/3.12/data/annotation/html/LRBase.Mmu.eg.db.html Bioconductor - LRBase.Mmu.eg.db Contains the LRBaseDb object to access data from several related annotation packages. bioconductormmuegdb https://bioconductor.statistik.tu-dortmund.de/packages/3.11/bioc/html/geneXtendeR.html Bioconductor - geneXtendeR geneXtendeR optimizes the functional annotation of ChIP-seq peaks by exploring relative differences in annotating ChIP-seq peak sets to variable-length gene... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.4/data/annotation/html/Norway981.db.html Bioconductor - Norway981.db Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) assembled using data from public repositories bioconductordb https://biocasia2024.bioconductor.org/ Bioconductor bioconductor https://www.bioconductor.org/packages/release/data/annotation/html/raex10sttranscriptcluster.db.html Bioconductor - raex10sttranscriptcluster.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://www.bioconductor.org/packages/release/bioc/html/methylInheritance.html Bioconductor - methylInheritance The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/data/annotation/html/illuminaHumanv4.db.html Bioconductor - illuminaHumanv4.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://www.bioconductor.org/packages/release/bioc/html/ramr.html Bioconductor - ramr The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.org/books/3.19/OSCA.advanced/droplet-processing.html Chapter 7 Droplet processing | Advanced Single-Cell Analysis with Bioconductor Chapter 7 Droplet processing | Advanced Single-Cell Analysis with Bioconductor single cell analysischapterdropletprocessingadvanced https://www.bioconductor.org/packages/release/bioc/html/gCrisprTools.html Bioconductor - gCrisprTools The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ Bioconductor Git Credentials bioconductorgitcredentials https://www.bioconductor.org/packages/release/bioc/html/AnVIL.html Bioconductor - AnVIL The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductoranvil https://bioconductor.statistik.tu-dortmund.de/packages/3.17/bioc/html/gmapR.html Bioconductor - gmapR GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from... bioconductor https://anaconda.org/bioconda/bioconductor-rawrr/files?page=0&sort=time&sort_order=desc&type=conda&version= bioconductor-rawrr - bioconda | Anaconda.org Install bioconductor-rawrr with Anaconda.org. Direct Access to Orbitrap Data and Beyond bioconductorrawrrbiocondaanaconda https://www.bioconductor.org/packages/release/bioc/html/Linnorm.html Bioconductor - Linnorm The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://pubmed.ncbi.nlm.nih.gov/31605800/ Using R and Bioconductor in Clinical Genomics and Transcriptomics Bioinformatics pipelines are essential in the analysis of genomic and transcriptomic data generated by next-generation sequencing (NGS). Recent guidelines... clinical genomicsusingr https://packages.ecosyste.ms/registries/bioconductor.org/maintainers/camp@bu.edu Joshua D. Campbell | bioconductor.org maintainers | Ecosyste.ms: Packages View the packages maintained by Joshua D. Campbell on the bioconductor.org package registry, including their contributions and dependencies. joshuacampbellbioconductormaintainersms https://www.bioconductor.org/packages/release/bioc/html/TCGAutils.html Bioconductor - TCGAutils The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://www.bioconductor.org/packages/release/bioc/html/sangerseqR.html Bioconductor - sangerseqR The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://dev.status.bioconductor.org/issues/2026-04-13-13-02-43_bioconductor_code_browser/ (Auto-detected) Bioconductor Code Browser Down | Bioconductor Status 2026-04-13-13-02-43 (Auto-detected) Bioconductor Code Browser Down code browserautodetectedbioconductorstatus https://bioc2022.bioconductor.org/ Bioconductor bioconductor https://bioconductor.org/packages/release/bioc/html/GenVisR.html Bioconductor - GenVisR The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductor https://bioconductor.statistik.tu-dortmund.de/packages/3.8/bioc/html/ldblock.html Bioconductor - ldblock Define data structures for linkage disequilibrium measures in populations. bioconductor https://www.bioconductor.org/install/ Bioconductor - Install The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductorinstall https://www.bioconductor.org/packages/release/data/annotation/html/illuminaMousev1.db.html Bioconductor - illuminaMousev1.db The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and... bioconductordb https://bioconductor.statistik.tu-dortmund.de/packages/3.11/data/annotation/html/pd.moe430a.html Bioconductor - pd.moe430a Platform Design Info for The Manufacturer's Name MOE430A bioconductorpd https://bioc2021.bioconductor.org/infrastructure-programming/paper111/ Short talk: atena: analysis of transposable elements in R and Bioconductor short talktransposable elementsatenaanalysis