Robuta

https://markohoven.com/ My Brain BLOG – thoughts, ideas and knowledge my brainblogthoughtsideasknowledge https://andysbrainblog.blogspot.com/2014/08/parametric-modulation-with-spm-why.html Andy's Brain Blog: Parametric Modulation with SPM: Why Order Matters Those who are the youngest children in the family are keenly aware of the disadvantages of being last in the pecking order; the quality of ... andy sbrain blogparametric https://andysbrainblog.blogspot.com/2012/10/updates.html Andy's Brain Blog: Updates Lately on this blog there has been a slowdown in productivity; I apologize. Three-fifths is due to negligence, neglect, and the active avoid... andy sbrain blogupdates https://andysbrainblog.blogspot.com/2013/08/coming-up-and-other-updates.html Andy's Brain Blog: Future Functional Connectivity Tutorials, and Other Updates A few notes: 1) The previous functional connectivity posts and tutorials are cribbed from Gang Chen's homepage, which is available here . ... andy sbrain blogfunctional connectivityfuture https://andysbrainblog.blogspot.com/2012/06/smoothing-in-afni.html Andy's Brain Blog: Smoothing in AFNI What Smoothing Is Smoothing, the process of introducing spatial correlation into your data by averaging across nearby data points (in... andy sbrain blogsmoothingafni https://andysbrainblog.blogspot.com/2014/05/thoughts-on-running.html Andy's Brain Blog: Thoughts on Running Common wisdom says that running attracts a specific type of personality; independent, persistent, and with a masochistic streak. Having run ... andy sbrain blogthoughts onrunning https://andysbrainblog.blogspot.com/2012/07/repost-why-blogs-fail.html Andy's Brain Blog: Repost: Why Blogs Fail Pictured: One of the reasons why blogs fail Blogger Neuroskeptic recently wrote a post about why blogs fail , observing what divides ... andy sbrain blogrepostblogsfail https://andysbrainblog.blogspot.com/2014/05/regional-homogeneity-analysis-with.html Andy's Brain Blog: Regional Homogeneity Analysis with 3dReHo, Part 1: Introduction Learning a new method, such as regional homogeneity analysis, can be quite difficult, and one often asks whether there is an easier, quicker... andy sbrain blog https://andysbrainblog.blogspot.com/2012/10/johns-gems-5-mesh-plots-of-t-maps.html Andy's Brain Blog: John's Gems #5: Mesh Plots of T-Maps For those of us who wish to act like we know more than we actually do, John Ashburner has a webpage of useful code snippets that allow you ... andy sbrain blog https://andysbrainblog.blogspot.com/2014/08/dti-analysis-soup-to-nuts-playlist.html Andy's Brain Blog: DTI Analysis: Soup to Nuts Playlist Instead of going through each DTI analysis step individually, I've collated everything into a Youtube playlist down below. Just remembe... soup to nutsbrain blogandydtianalysis https://andysbrainblog.blogspot.com/2014/05/regional-homogeneity-analysis-part-ii.html Andy's Brain Blog: Regional Homogeneity Analysis, Part II: Processing Pipelines For regional homogeneity analysis (ReHo), many of the processing steps of FMRI data remain the same: slice-timing correction, coregistration... andy sbrain blogpart iiregional https://andysbrainblog.blogspot.com/2013/03/head-motion-and-functional-connectivity.html Andy's Brain Blog: Head Motion and Functional Connectivity Yesterday as I was listening to a talk about diffusion tensor imaging, a professor asked about the influences of head motion on DTI data, an... andy sbrain bloghead motionfunctionalconnectivity https://andysbrainblog.blogspot.com/2012/09/disclaimers.html Andy's Brain Blog: Disclaimers Yesterday I was surprised to find AFNI message boards linking to my first blog post about AFNI. I felt as though the klieg lights had sudden... andy sbrain blogdisclaimers https://andysbrainblog.blogspot.com/2012/03/afni-bootcamp-day-1.html Andy's Brain Blog: AFNI Bootcamp: Day 1 Today was the first day of AFNI bootcamp, and served as an introduction to the software as well as the philosophy behind it. On the techni... andy sbrain blogafnibootcampday https://andysbrainblog.blogspot.com/2017/01/are-all-fmri-results-wrong.html Andy's Brain Blog: Are All FMRI Results Wrong? False positive rates in science have been an issue recently; and although we all had a good laugh when it happened to the social psycholo... andy sbrain blogfmriresultswrong https://andysbrainblog.blogspot.com/2013/03/ Andy's Brain Blog: March 2013 Cognitive Neuroscience Made Fun andy sbrain blogmarch https://andysbrainblog.blogspot.com/2013/05/capital-city-half-marathon.html Andy's Brain Blog: Capital City Half Marathon I and my sidekick (you haven't met her) always strive to bring you the hottest, moistest tutorial videos and neuroscience-related news, but ... andy sbrain blogcapital cityhalfmarathon https://andysbrainblog.blogspot.com/2013/05/parameter-extraction-in-afni-3dmaskave.html Andy's Brain Blog: Parameter Extraction in AFNI: 3dmaskave and 3dmaskdump Previously we showed how to extract parameters using Marsbar in SPM and featquery in FSL, and the concept is identical for AFNI. Once you ha... andy sbrain blogparameter https://andysbrainblog.blogspot.com/2012/08/tips-for-graduate-students-preparing.html Andy's Brain Blog: Tips for Graduate Students: Preparing for Qualification Exams Having recently completed my candidacy exam (or qualification exam, or "quals"), I now feel compelled to share with everyone what I have lea... for graduate studentsbrain blogandytips https://andysbrainblog.blogspot.com/2012/04/my-new-webpage.html Andy's Brain Blog: New Webpage I have a new webpage over on the IU servers, which contains a professional-looking picture of me and links to stuff that may be useful. Som... andy sbrain blognewwebpage https://andysbrainblog.blogspot.com/2012/10/group-level-smoothness-estimation-in-spm.html Andy's Brain Blog: Group-Level Smoothness Estimation in SPM Fathers and teachers, I ponder: What is hell? I maintain that it is the suffering of being unable to love. Oh, and it also might be the ... andy sbrain bloggrouplevelsmoothness https://andysbrainblog.blogspot.com/2012/10/milwaukee-marathon-postmortem.html Andy's Brain Blog: Milwaukee Marathon Postmortem I arose just before six, the wind outside a mere whisper and the lake below black as jet and the wretched sun yet to raise its head above th... andy sbrain blogmilwaukee marathonpostmortem https://andysbrainblog.blogspot.com/2015/08/nitp-days-1-2.html Andy's Brain Blog: Neuroimaging Training Program: Days 1 & 2 The first two days of NiTP have been intense - MRI physics, neurobiology, experimental design, plus much eating out, have all been crammed d... andy sbrain blogtraining programneuroimagingdays https://andysbrainblog.blogspot.com/2014/05/automating-3dreho.html Andy's Brain Blog: Automating 3dReHo As a rider to our tale of Regional Homogeneity analysis, we last discuss here how to automate it over all the subjects of your neuroimaging ... andy sbrain blogautomating https://andysbrainblog.blogspot.com/2014/01/fir-models-redux.html Andy's Brain Blog: FIR Models Redux As promised, here is a tutorial video on how to set up Finite Impulse Response (FIR) models in AFNI. The previous post contained the code fo... andy sbrain blogfirmodelsredux https://andysbrainblog.blogspot.com/2013/06/overview-of-afniprocpy.html Andy's Brain Blog: Overview of afni_proc.py For those of you without access to a Unix-based platform, or whether you are just having a difficult time correctly installing your Python l... andy sbrain blogoverview ofafniproc https://andysbrainblog.blogspot.com/2014/05/regional-homogeneity-analysis-part-iii.html Andy's Brain Blog: Regional Homogeneity Analysis, Part III: Running 3dReHo Before moving on to using 3dReHo, we need to first ask some important rhetorical questions (IRQs): Did you know that with the advent of fr... andy sbrain blogpart iiiregional https://andysbrainblog.blogspot.com/2012/07/chopin-nocturne-in-e-flat-major.html Andy's Brain Blog: Chopin: Nocturne in E-flat Major This is probably one of the best-known and best-loved out of all Chopin's nocturnes - rightly so. Although it has been overplayed to d... andy sbrain blogchopinnocturneflat https://andysbrainblog.blogspot.com/2013/04/cns-2013-san-francisco.html Andy's Brain Blog: CNS 2013: San Francisco Readers and fellow brain bloggers, I will be presenting a poster at CNS this Monday from 8:00am-11:00am, session D, poster 57. Featuri... andy sbrain blogcnssanfrancisco https://andysbrainblog.blogspot.com/2013/01/afni-command-of-week-cdf.html Andy's Brain Blog: AFNI Command of the Week: cdf Not necessarily a neuroimaging-specific tool, cdf simply converts between p-values and t-statistics (or F-statistics) using the cumulative d... of the weekandy sbrain blogafnicommand https://andysbrainblog.blogspot.com/2013/07/rochester-i-am-coming-for-you.html Andy's Brain Blog: Rochester! I am Coming for You! Go for the eyes, Boo, go for the eyes! The next three weeks will be spent in durance ecstatic at the medical center in Rochester, New Y... andy sbrain blogrochestercoming https://andysbrainblog.blogspot.com/2013/05/why-do-rednecks-do-it-doggy-style.html Andy's Brain Blog: Why Do Rednecks Do It Doggy Style? So they can both watch NASCAR. Now that I have your attention, I would like to turn to a more serious topic: Sub-brik selection in AFNI. I... andy sbrain blogrednecksdoggystyle https://andysbrainblog.blogspot.com/2013/01/afni-command-of-week-3dcopy.html Andy's Brain Blog: AFNI Command of the Week: 3dcopy Nothing earth-shattering here: Just a straightforward conversion command to let AFNI import data from different file types, such as .nii or ... of the weekandy sbrain blogafnicommand https://andysbrainblog.blogspot.com/2012/11/fsl-tutorial-featquerygui.html Andy's Brain Blog: FSL Tutorial: Featquery_gui Now that we've created our masks, we can go ahead and extract data using FSL's featquery tool. You may want to run it from the command line ... andy sbrain blogfsltutorialgui https://andysbrainblog.blogspot.com/2012/12/andys-brain-blog-book-club-lolita.html Andy's Brain Blog: Andy's Brain Blog Book Club: Lolita The one non-scandalous image of Lolita I could find Since its publication over five decades ago, Lolita - one of Nabokov's several mas... andy sbrain blogbook clublolita https://andysbrainblog.blogspot.com/2012/06/design-efficiency.html Andy's Brain Blog: Design Efficiency An important consideration for any fMRI experimental design is how efficiently the BOLD response will be estimated, given the timing of even... andy sbrain blogdesignefficiency https://andysbrainblog.blogspot.com/2013/02/hot-hot-hot-blog-dedicated-to-mvpa.html Andy's Brain Blog: Hot, Hot, HOT: Blog Dedicated to MVPA In my whole world-wide wandering, I have concluded that nobody really knows what multivoxel pattern analysis (MVPA) is. For example, a c... andy sbrain bloghotdedicated https://braininitiative.nih.gov/news-events/blog?page=8 The BRAIN Blog | BRAIN Initiative the brainbloginitiative https://andysbrainblog.blogspot.com/2012/08/aaand-were-back.html Andy's Brain Blog: aaand, We're Back I'm back from my vacation to Minnesota and ready to grind out some more posts to educate the filthy, teeming swarms of graduate students see... andy sbrain blogback https://andysbrainblog.blogspot.com/2012/09/duration-regressors-with-fmri.html Andy's Brain Blog: Duration Regressors with fMRI This subject was brought to my attention by a colleague who wanted to know whether parametric modulation or duration modulation was a better... andy sbrain blogdurationfmri https://andysbrainblog.blogspot.com/2016/08/an-interview-with-reviewer-2.html Andy's Brain Blog: An Interview with Reviewer #2 Peer review, the cherished academic tradition of having your work criticized by anonymous angry people, is an excellent chance for you to se... andy sbrain bloginterview withreviewer https://andysbrainblog.blogspot.com/2013/07/template-spreadsheet-for-fmri-results.html Andy's Brain Blog: Template Spreadsheet for FMRI Results Organizing FMRI results is hard work. Perhaps that explains why the vast majority of the world's population doesn't do it, and wouldn't ... andy sbrain blogtemplatespreadsheetfmri https://andysbrainblog.blogspot.com/2013/01/brief-overview-of-standard-error.html Andy's Brain Blog: Brief Overview of Standard Error As I begin teaching a statistics course next semester, I've been spending the past couple of weeks hitting the books and refreshing my stati... andy sbrain blogbrief overviewof standarderror https://andysbrainblog.blogspot.com/2015/08/neuroimaging-training-program-2015.html Andy's Brain Blog: Neuroimaging Training Program 2015 Over the next two weeks I will be attempting to blog regularly about what we will be learning at the UCLA Neuroimaging Training Progra... andy sbrain blogtraining programneuroimaging https://andysbrainblog.blogspot.com/2013/02/psychopathy-and-dark-patch-of-brain.html Andy's Brain Blog: Psychopathy and the Dark Patch of the Brain Childe Roland to the Dark Patch Came Recently my attention was grabbed and squeezed by the vitals by a news item linking frontal lobe ... andy sbrain blogthe darkpsychopathypatch https://andysbrainblog.blogspot.com/2013/07/rochester-updates.html Andy's Brain Blog: Rochester Updates I've only been in Rochester for about ten days now, but so far it's been a good experience. After arriving in the middle of a heatwave a... andy sbrain blogrochesterupdates https://andysbrainblog.blogspot.com/2012/07/fsl-tutorial-feat-part-2-reckoning.html Andy's Brain Blog: FSL Tutorial 2: FEAT (Part 2): The Reckoning (Note: Hit the fullscreen option and play at a higher resolution for better viewing) Now things get serious. I am talking more serious... andy sbrain blogfsl https://andysbrainblog.blogspot.com/2013/05/what-good-is-neuroimaging.html Andy's Brain Blog: What Good is Neuroimaging? If there is one absolute in this universe, it is that people want more stuff. Given the choice between stuff and nothing, people will choose... andy sbrain bloggoodneuroimaging https://andysbrainblog.blogspot.com/2012/11/spm-setting-origin-and-normalization.html Andy's Brain Blog: SPM: Setting the Origin and Normalization (Feat. Chad) Of all the preprocessing steps in FMRI data, normalization is most susceptible to errors, failure, mistakes, madness, and demonic possession... andy sbrain blog https://andysbrainblog.blogspot.com/2013/05/combining-rois.html Andy's Brain Blog: Combining ROIs Once you've used a tool like fslmaths, 3dcalc, or Marsbar to create a single ROI, you can combine several of these ROIs using the same tools... andy sbrain blogcombiningrois https://andysbrainblog.blogspot.com/2012/11/talairach-manual-normalization-in-afni.html Andy's Brain Blog: Manual Talairach Normalization in AFNI Back in olden times, before the invention of modern devices such as computers and slap bracelets, brain researchers relied on standard coord... andy sbrain blogmanualnormalizationafni https://andysbrainblog.blogspot.com/2012/08/lesion-studies-thoughts.html Andy's Brain Blog: Lesion Studies: Thoughts (Note: I recently completed my candidacy exam, which involved writing a trio of papers focusing on different aspects of my research. Most of... andy sbrain bloglesionstudiesthoughts https://andysbrainblog.blogspot.com/2012/09/youtube-videos-part-2.html Andy's Brain Blog: Youtube Videos: Part 2 I've been uploading more videos recently; the first, an impromptu by Schubert, as I have been on a Schubert kick recently; the second, an in... andy sbrain blogyoutube videospart https://andysbrainblog.blogspot.com/2013/07/fmri-workshop-university-of-rochester.html Andy's Brain Blog: FMRI Workshop: University of Rochester For those of you attending the University of Rochester, and who are intrigued, enticed, and otherwise titillated by neuroimaging methods... andy sbrain bloguniversity offmriworkshop https://andysbrainblog.blogspot.com/2012/12/afnis-ubersubjectpy.html Andy's Brain Blog: AFNI's uber_subject.py Back in the good old days, we would create our scripts ex nihilo ; out of nothingness would we construct gigantic, Babel-esque scripts... andy sbrain blogafniubersubject https://andysbrainblog.blogspot.com/2012/12/andys-brain-blog-advice-column-should.html Andy's Brain Blog: Andy's Brain Blog Advice Column: Should You Date In Graduate School? Dear Andy's Brain Blog, I am midway through the second year of my graduate program, and over the past couple of months I have gotten to kn... andy sbrain blogadvice column https://andysbrainblog.blogspot.com/2012/12/afni-command-of-week-3dzcutup-and-3dzcat.html Andy's Brain Blog: AFNI Command of the Week: 3dZcutup and 3dZcat When I used to work at OSU, on the lab wiki I would put up a new AFNI command every week, detailing a program that isn't necessarily used al... of the weekandy sbrain blog https://andysbrainblog.blogspot.com/2014/03/resting-state-analysis-part-vii-end.html Andy's Brain Blog: Resting State Analysis, Part VII: The End For the last part of the analysis, we are going to simply take all of the z-maps we have just created, and enter them into a second-level an... andy sbrain blogstate analysispart viiresting https://beatysbabblingbrainblog.blogspot.com/2013/10/i-stand-alone.html Beaty's Babbling Brain Blog: I Stand Alone (I wrote this blog 8/31/13) The director of this program is so unfriendly to me. I don't understand. He's so short with me about everyth... brain blogbeatybabblingstandalone https://andysbrainblog.blogspot.com/2014/06/ Andy's Brain Blog: June 2014 Cognitive Neuroscience Made Fun andy sbrain blogjune https://andysbrainblog.blogspot.com/2012/04/test.html Andy's Brain Blog: Karl Friston's Rules for Reviewing This post was orphaned a while back when I was testing links to papers, but I figured I should go back and explain what I was doing. This is... andy sbrain blogkarl fristonrulesreviewing https://andysbrainblog.blogspot.com/2014/04/diapsalmata.html Andy's Brain Blog: Diapsalmata Out of the Files of a Psychologist There is no hypothesis incredible enough, no argument weak enough, no idea ridiculous enough, that can... andy sbrain blog https://braininitiative.nih.gov/news-events/blog?title=Clinical+Trial The BRAIN Blog | BRAIN Initiative the brainbloginitiative https://andysbrainblog.blogspot.com/2013/07/a-reader-writes-basic-fmri-questions.html Andy's Brain Blog: A Reader Writes: Basic FMRI Questions Mine's bigger I recently received an email with some relatively basic questions about FMRI, and both the question and answers might app... andy sbrain blogreaderwritesbasic https://andysbrainblog.blogspot.com/2013/11/reminiscences-of-sfn-2013.html Andy's Brain Blog: Reminiscences of SFN 2013 In the past two weeks since I have returned from San Diego, I still find myself struck with lucid recollections during my hypopompic states,... andy sbrain blogreminiscencessfn https://andysbrainblog.blogspot.com/2012/07/fsl-tutorial-0-conversion-from-dicom-to.html Andy's Brain Blog: FSL Tutorial 0: Conversion from DICOM to NIFTI After publishing my last tutorial, I realized that I should probably take a step back and detail how to convert raw scanner images into ... andy sbrain blog https://andysbrainblog.blogspot.com/2014/01/the-beethoven-piano-sonatas.html Andy's Brain Blog: The Beethoven Piano Sonatas Warning: Classical music nerditry ahead. (And some domestic violence.) One evening while discussing the music of Beethoven with a friend... andy sbrain blogbeethovenpianosonatas https://andysbrainblog.blogspot.com/2013/06/an-empirical-look-at-peer-review-process.html Andy's Brain Blog: An Empirical Look at the Peer-Review Process "Everybody talks about the weather," Mark Twain once famously declared, "But nobody ever does anything about it." He then ate a knife to sho... the peer reviewandy sbrain blog https://andysbrainblog.blogspot.com/2012/09/afni-tutorial-to3d.html Andy's Brain Blog: AFNI Tutorial: to3d In the beginning, a young man is placed upon the scanning table as if in sacrifice. He is afraid; there are loud noises; he performs endless... andy sbrain blogafnitutorial https://teachersbrain.com/ Teacher’s Brain Blog | Teaching Ideas for K–3 ClassroomsBLOG - Teacher's Brain Jan 21, 2026 - Teacher’s Brain shares classroom tested teaching ideas, printables, and lesson strategies to help K–3 teachers teach smarter and stress less. brain blogteaching ideasteacher https://andysbrainblog.blogspot.com/2013/02/model-based-fmri-analysis-thoughts.html Andy's Brain Blog: Model-Based FMRI Analysis: Thoughts Model-based FMRI analysis is so hot right now. It's so hot, it could take a crap, wrap it in tin foil, put hooks on it, and sell it as earri... andy sbrain blogmodel basedfmrianalysis https://thebrain.blog/ Psychology, neuroscience, memory & much more - The Brain Blog Understand the mind, improve your life, boost your business much morethe brainpsychologyneurosciencememory https://www.braininjurylawyer24-7blog.com/ Brain Injury Lawyer Blog 24/7 — Published by New York, New York Brain Injury Attorneys — Stephen... brain injury lawyer https://www.atfmb.com/ All Things From My Brain - Patrick Hester's Blog Patrick Hester's Blog all things from my brainpatrickhesterblog