plos computational biology

https://portal.fis.leibniz-lsb.tum.de/en/activities/plos-computational-biology-journal/ PLoS Computational Biology (Journal) - Leibniz-LSB@TUM plos computational biology journal leibniz lsb tum https://citec.repec.org/s/2025/plopcbi00.html Citation analysis for PLOS Computational Biology / Public Library of Science PLOS Computational Biology / Public Library of Science Citation analysis ; hindex ; h-index ; citation rakings ; bibliometrics ; citation metrics ; impact... plos computational biology citation analysis public library science https://biologue.plos.org/2016/08/31/plos-computational-biology-symposium-2016/ PLOS Computational Biology Symposium 2016 - PLOS Biologue Nov 25, 2024 - PLOS Computational Biology invites you to a Symposium at the National Institutes of Health on the 16th September 2016. The topic of the day will be:... plos computational biology symposium https://epub.ub.uni-muenchen.de/15106/ PLoS Computational Biology Conference Postcards from ISMB/ECCB 2011 plos computational biology postcards from conference https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003262 How Can PLOS Computational Biology Help the Biological Sciences? | PLOS Computational Biology plos computational biology how can help biological sciences https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011270 CyVerse: Cyberinfrastructure for open science | PLOS Computational Biology CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research... open science cyverse cyberinfrastructure plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010113 Sequence dependence of transient Hoogsteen base pairing in DNA | PLOS Computational Biology Author summary Recently, an alternative DNA base-pairing conformation, known as Hoogsteen (HG), has been found to coexist with the well-known... https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000424 A Quick Guide to Organizing Computational Biology Projects | PLOS Computational Biology a quick guide computational biology organizing projects plos https://journals.plos.org/ploscompbiol/ PLOS Computational Biology plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008618 Evaluating epidemic forecasts in an interval format | PLOS Computational Biology Author summary During the COVID-19 pandemic, model-based probabilistic forecasts of case, hospitalization, and death numbers can help to improve situational... evaluating epidemic forecasts interval format https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007358 Seven quick tips for analysis scripts in neuroimaging | PLOS Computational Biology quick tips seven analysis https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009982 Ten simple rules for building a successful science start-up | PLOS Computational Biology https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.0020121 PLOS Computational Biology plos computational biology https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1002728 PLOS Computational Biology plos computational biology https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1000388 Ten Simple Rules for Choosing between Industry and Academia | PLOS Computational Biology industry and academia simple rules https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1004903 PLOS Computational Biology Author Summary When the brain is presented with an ambiguous stimulus like the Necker cube or what is known as the quartet illusion, the perception will... plos computational biology https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1010258 PLOS Computational Biology Author summary Intrinsically disordered proteins dynamically change their conformation, which allows them to fulfil many biologically significant functions,... plos computational biology https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1002171 PLOS Computational Biology Author Summary Here we recreate in vitro the sequestration mechanism thought to underlie the extraordinary sensitivity (the steepness of the input/output... plos computational biology https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1004709 PLOS Computational Biology Author Summary The prevalence of cooperation among human societies is a puzzle that has caught the eye of researchers from multiple fields. Why is that people... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000395 Brain Anatomical Network and Intelligence | PLOS Computational Biology Author Summary Networks of interconnected brain regions coordinate brain activities. Information is processed in the grey matter (cortex and subcortical... brain anatomical network intelligence plos https://biologue.plos.org/?category=what-to-read-now PLOS Biologue - The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. plos biologue the blog biology genetics computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007640 On the choice of metric in gradient-based theories of brain function | PLOS Computational Biology Author summary A good skier may choose to follow the steepest direction to move as quickly as possible from the mountain peak to the base. Steepest descent in... https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1000110 The Ascent of the Abundant: How Mutational Networks Constrain Evolution | PLOS Computational Biology Author SummaryEvolutionary biology tells us much about the immediate fate of a mutation once it appears, but relatively little about its long-term evolutionary... the ascent https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003326 Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data | PLOS Computational Biology Mapping the chromosomal locations of transcription factors, nucleosomes, histone modifications, chromatin remodeling enzymes, chaperones, and polymerases is... https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003553 A Toolbox for Representational Similarity Analysis | PLOS Computational Biology Neuronal population codes are increasingly being investigated with multivariate pattern-information analyses. A key challenge is to use measured brain-activity... toolbox representational similarity analysis plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0020036 Practical Strategies for Discovering Regulatory DNA Sequence Motifs | PLOS Computational Biology practical strategies dna sequence discovering regulatory https://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1002728 Seven Years; It's Time for a Change | PLOS Computational Biology time for a change seven years https://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1000247 I Am Not a Scientist, I Am a Number | PLOS Computational Biology i am not scientist number plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002750 Integrating Cellular Metabolism into a Multiscale Whole-Body Model | PLOS Computational Biology Author Summary Cellular metabolism is a key element in human physiology. Ideally the metabolic network needs to be considered within the context of the... cellular metabolism https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007695 Ad hoc efforts for advancing data science education | PLOS Computational Biology Author summary Large datasets are becoming integral to society broadly and to biological sciences in particular. As a result, demand for sophisticated data... data science education ad hoc efforts advancing https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002227 Patient-Specific Data Fusion Defines Prognostic Cancer Subtypes | PLOS Computational Biology Author Summary The goal of personalised medicine is to develop accurate diagnostic tests that identify patients who can benefit from targeted therapies. To... data fusion patient specific defines https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1005130 PLOS Computational Biology Author Summary We present a new tool, SCOTTI, to efficiently reconstruct transmission events within outbreaks. Our approach combines genetic information from... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003365 Flow Cytometry Bioinformatics | PLOS Computational Biology Flow cytometry bioinformatics is the application of bioinformatics to flow cytometry data, which involves storing, retrieving, organizing, and analyzing flow... flow cytometry bioinformatics plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1001135 The Development of Computational Biology in Pakistan: Still a Long Way to Go | PLOS Computational... a long way to go https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002285 Integrating Bioinformatics Tools to Handle Glycosylation | PLOS Computational Biology bioinformatics tools integrating handle glycosylation plos https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1000550 PLOS Computational Biology Author Summary Genome-wide data on interactions between proteins are now available, and networks of protein interactions are the keys to understanding diseases... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000247 I Am Not a Scientist, I Am a Number | PLOS Computational Biology i am not scientist number plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005037 The Virtuous Cycle of a Data Ecosystem | PLOS Computational Biology virtuous cycle of a data ecosystem plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004131 Integrating Interactive Computational Modeling in Biology Curricula | PLOS Computational Biology While the use of computer tools to simulate complex processes such as computer circuits is normal practice in fields like engineering, the majority of life... computational modeling integrating interactive biology curricula https://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1000110 The Ascent of the Abundant: How Mutational Networks Constrain Evolution | PLOS Computational Biology Author SummaryEvolutionary biology tells us much about the immediate fate of a mutation once it appears, but relatively little about its long-term evolutionary... the ascent https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002820 Chapter 5: Network Biology Approach to Complex Diseases | PLOS Computational Biology Complex diseases are caused by a combination of genetic and environmental factors. Uncovering the molecular pathways through which genetic factors affect a... network biology chapter approach complex diseases https://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1003635 Spatial Transmission of 2009 Pandemic Influenza in the US | PLOS Computational Biology Author Summary The determinants of influenza spatial spread are not fully understood, in part due to the insufficient geographic resolution of incidence data.... in the us pandemic influenza https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1003896 Teaching Bioinformatics in Concert | PLOS Computational Biology Can biology students without programming skills solve problems that require computational solutions? They can if they learn to cooperate effectively with... in concert teaching bioinformatics plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002108 Ten Simple Rules for Building and Maintaining a Scientific Reputation | PLOS Computational Biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002180 Protein Networks as Logic Functions in Development and Cancer | PLOS Computational Biology Author Summary Biological outcomes are often determined by modules of proteins working in combination. In classic biological studies, these modules have been... logic functions in development https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1006914 PLOS Computational Biology The negative effects of extremely competitive academic and research environments on the performance and health of researchers are well known and common... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000508 Brief Overview of Bioinformatics Activities in Singapore | PLOS Computational Biology activities in singapore brief overview bioinformatics plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003282 Communication and Common Interest | PLOS Computational Biology Author Summary How can honest communication evolve, given the many incentives to deceive, conceal information, or exaggerate? In recent work, it has often been... communication common interest plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030001 Automated Querying of Genome Databases | PLOS Computational Biology automated querying genome databases plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000595 ON/OFF and Beyond - A Boolean Model of Apoptosis | PLOS Computational Biology Author Summary Apoptosis is one of the most investigated topics in the life sciences, especially as this kind of programmed cell death has been linked to... on off and beyond https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1000576 PLOS Computational Biology Author Summary Our visual system keeps pace with a rapidly changing stream of information as we view the natural world. To do so, it uses a strongly regulated... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003716 On the Use of Human Mobility Proxies for Modeling Epidemics | PLOS Computational Biology Author Summary The spatial dissemination of a directly transmitted infectious disease in a population is driven by population movements from one region to... https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1002527 Standing Genetic Variation and the Evolution of Drug Resistance in HIV | PLOS Computational Biology Author Summary For HIV patients who are treated with antiretroviral drugs, treatment usually works well. However, the virus can, and sometimes does, become... https://biologue.plos.org/page/7/ PLOS Biologue - Page 7 of 39 - The blog for PLOS Biology, PLOS Genetics and PLOS Computational... The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030123 Recent Evolutions of Multiple Sequence Alignment Algorithms | PLOS Computational Biology multiple sequence alignment recent evolutions algorithms plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012506 A diel multi-tissue genome-scale metabolic model of Vitis vinifera | PLOS Computational Biology Author summary Grapevine is one of the most important crops in the world, mainly due to wine production. Understanding grape metabolism is key to improving... https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012323 Upper bounds for integrated information | PLOS Computational Biology Author summary Integrated Information Theory (IIT) offers a theoretical framework to quantify the causal irreducibilty of a system, subsets of the units in a... upper bounds integrated information plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002495 Simulation of Molecular Data under Diverse Evolutionary Scenarios | PLOS Computational Biology simulation molecular data https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003896 Teaching Bioinformatics in Concert | PLOS Computational Biology Can biology students without programming skills solve problems that require computational solutions? They can if they learn to cooperate effectively with... in concert teaching bioinformatics plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006915 Ten quick tips for creating an effective lesson | PLOS Computational Biology Author summary As a species, we know as much about teaching and learning as we do about public health, but most people who teach at the postsecondary level are... quick tips ten creating https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2002050 All biology is computational biology | PLOS Biology Here, I argue that computational thinking and techniques are so central to the quest of understanding life that today all biology is computational biology.... all biology computational plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000171 Sizing Up Allometric Scaling Theory | PLOS Computational Biology Author Summary The rate at which an organism produces energy to live increases with body mass to the 3/4 power. Ten years ago West, Brown, and Enquist posited... sizing up scaling theory plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002445 Circular Permutation in Proteins | PLOS Computational Biology circular permutation proteins plos computational https://biologue.plos.org/page/3/?category=uncategorized PLOS Biologue - Page 3 of 9 - The blog for PLOS Biology, PLOS Genetics and PLOS Computational... The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003516 Computational Biology and Bioinformatics in Nigeria | PLOS Computational Biology Over the past few decades, major advances in the field of molecular biology, coupled with advances in genomic technologies, have led to an explosive growth in... computational biology in nigeria bioinformatics plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002902 Chapter 15: Disease Gene Prioritization | PLOS Computational Biology Disease-causing aberrations in the normal function of a gene define that gene as a disease gene. Proving a causal link between a gene and a disease... chapter disease gene prioritization plos https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1000173 PLOS Computational Biology plos computational biology https://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1000186 Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads | PLOS Computational Biology Author Summary In this paper we demonstrate that a bacterial genome, Pseudomonas aeruginosa, can be decoded using very short DNA sequences, namely, those... https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1000922 PLOS Computational Biology Author Summary The proto-oncogene Ras mediates signaling pathways controlling cell proliferation and development by cycling between active and inactive... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004883 Modularity Induced Gating and Delays in Neuronal Networks | PLOS Computational Biology Author Summary The capacity to transmit information between connected parts of a neuronal network is fundamental to its function. The organization of network... modularity induced gating delays https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1002221 A Neurodynamic Account of Spontaneous Behaviour | PLOS Computational Biology Author Summary Various psychological observations have suggested that the spontaneously generated behaviors of humans reflect statistical structures extracted... neurodynamic account spontaneous behaviour plos https://journals.plos.org/ploscompbiol/s/licenses-and-copyright PLOS Computational Biology plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003040 A Balance Equation Determines a Switch in Neuronal Excitability | PLOS Computational Biology Author Summary Understanding the changing electrophysiological signatures of neurons in different physiological and pharmacological conditions is a central... neuronal excitability balance equation switch https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002821 Chapter 6: Structural Variation and Medical Genomics | PLOS Computational Biology Differences between individual human genomes, or between human and cancer genomes, range in scale from single nucleotide variants (SNVs) through intermediate... structural variation and medical chapter genomics plos https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.1014024 PLOS Computational Biology Author summary Vocal interactions frequently occur in social groups where the ability to quickly identify and respond to specific individuals is crucial. Zebra... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003662 A New Online Computational Biology Curriculum | PLOS Computational Biology A recent proliferation of Massive Open Online Courses (MOOCs) and other web-based educational resources has greatly increased the potential for effective... a new computational biology online curriculum plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1013125 Fusing multisensory signals across channels and time | PLOS Computational Biology Author summary We constantly detect sensory inputs, like sights and sounds, and use combinations of these signals to guide our actions. For example, by reading... fusing multisensory signals across channels https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003453 Ten Simple Rules for Writing Research Papers | PLOS Computational Biology rules for writing research papers ten simple plos https://biologue.plos.org/page/3/?category=research PLOS Biologue - Page 3 of 14 - The blog for PLOS Biology, PLOS Genetics and PLOS Computational... The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009377 Ten simple rules for avoiding predatory publishing scams | PLOS Computational Biology avoiding predatory publishing simple rules ten https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0010032 Evolution of Genetic Potential | PLOS Computational Biology Organisms employ a multitude of strategies to cope with the dynamical environments in which they live. Homeostasis and physiological plasticity buffer changes... evolution genetic potential plos computational https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002276 BeadArray Expression Analysis Using Bioconductor | PLOS Computational Biology Illumina whole-genome expression BeadArrays are a popular choice in gene profiling studies. Aside from the vendor-provided software tools for analyzing... expression analysis using bioconductor plos https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002173 Are There Laws of Genome Evolution? | PLOS Computational Biology Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular... genome evolution laws plos computational biology https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1005061 Ten Simple Rules for Developing a MOOC | PLOS Computational Biology simple rules ten developing mooc plos https://journals.plos.org/ploscompbiol/article/comment?id=10.1371/annotation/4ebb888e-4be1-4657-b95b-87e3d6509034 Ten Simple Rules for Providing a Scientific Web Resource | PLOS Computational Biology simple rules https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030129 A Primer on Learning in Bayesian Networks for Computational Biology | PLOS Computational Biology a primer bayesian networks computational biology learning https://biologue.plos.org/page/3/?category=molecular-biology PLOS Biologue - Page 3 of 5 - The blog for PLOS Biology, PLOS Genetics and PLOS Computational... The blog for PLOS Biology, PLOS Genetics and PLOS Computational Biology. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002616 Digital Epidemiology | PLOS Computational Biology Mobile, social, real-time: the ongoing revolution in the way people communicate has given rise to a new kind of epidemiology. Digital data sources, when... digital epidemiology plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010520 Ten simple rules on how to develop a stakeholder engagement plan | PLOS Computational Biology To make research responsible and research outcomes meaningful, it is necessary to communicate our research and to involve as many relevant stakeholders as... https://journals.plos.org/ploscompbiol/article/citation?id=10.1371/journal.pcbi.0030182 PLOS Computational Biology Author SummaryMany functions performed within a living cell are mediated by specific interactions between proteins. Precise geometric and chemical matches... plos computational biology https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005248 A human judgment approach to epidemiological forecasting | PLOS Computational Biology Author summary Despite advanced and widely accessible health care, a large number of annual deaths in the United States are attributable to infectious diseases... human judgment approach epidemiological forecasting

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