https://elixir-iib-training.github.io/site/2026-06-29-Profiling_microbial_communities
Training courses: Profiling of microbial communities using targeted and shotgun metagenomics |...
29 June - 3 July 2026 Bari, Italy
training coursesmicrobial communitiesprofiling
https://www.mdpi.com/2073-4441/15/17/3047
Low Concentrations of Antibiotics Alter Microbial Communities and Induce High Abundances of...
Antibiotic resistance poses a significant threat to the public health domain. A favorable platform for generating and disseminating antibiotic-resistant genes...
microbial communitieslowconcentrationsantibioticsalter
https://pmc.ncbi.nlm.nih.gov/articles/PMC12445003/
Temperature Controls the Lifetimes and Microbial Communities Degrading Cellulose Diacetate in the...
Cellulose diacetate (CDA), a biobased material widely used in consumer products, is biodegradable in the coastal ocean. However, the effect of water...
temperature controlsmicrobial communitiescellulose diacetatelifetimes
https://www.biu.ac.il/en/article/11280
How Diverse Microbial Communities Remain Stable | Bar Ilan University
Researchers demonstrate first evidence of an old theory in microbial ecosystems
microbial communitiesbar ilandiverseremainstable
https://pmc.ncbi.nlm.nih.gov/articles/PMC10431941/
Ecosystem multifunctionality and soil microbial communities in response to ecological restoration...
Linkages between microbial communities and multiple ecosystem functions are context-dependent. However, the impacts of different restoration measures on...
microbial communitiesin responseecosystemmultifunctionalitysoil
https://pmc.ncbi.nlm.nih.gov/articles/PMC10308889/
Global assembly of microbial communities - PMC
Different habitats harbor different microbial communities with elusive assembly mechanisms. This study comprehensively investigated the global assembly...
global assemblymicrobial communitiespmc
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.1002198/full
Frontiers | The characterization of microbial communities and associations in karst tiankeng
The karst tiankeng is a special and grand negative terrain on the surface, that maintains a unique ecosystem. However, knowledge about bacterial and fungal c...
microbial communitiesfrontierscharacterization
https://www.southampton.ac.uk/courses/2029-30/modules/biol3068
Fluxes, Cycles and Microbial Communities | BIOL3068 | University of Southampton
Microorganisms are key players in all the major biogeochemical cycles on Earth. Fluxes, Cycles, and Microbial Communities explores the microbial influence on...
microbial communitiesuniversity offluxescyclessouthampton
https://www.southampton.ac.uk/courses/2031-32/modules/biol3068
Fluxes, Cycles and Microbial Communities | BIOL3068 | University of Southampton
Microorganisms are key players in all the major biogeochemical cycles on Earth. Fluxes, Cycles, and Microbial Communities explores the microbial influence on...
microbial communitiesuniversity offluxescyclessouthampton
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2025.1516594/full
Frontiers | Characterization of microbial communities in flavors and fragrances during storage
Flavors and fragrances are essential for product quality, yet they are highly susceptible to contamination due to high moisture content and rich nutrients. T...
flavors and fragrancesmicrobial communitiesfrontierscharacterization
https://www.sintef.no/en/publications/publication/1139527/
Microbial communities associated with biodegradation in microcosm studies of dispersed MC252 oil...
microbial communitiesassociated with
https://www.themarysue.com/amazon-microbial-extinctions/
Deforestation Can Wipe Out Microbial Communities | The Mary Sue
Dec 27, 2012 - Deforestation can wipe out trees and cause habitat loss that leads to the extinction of animals like birds and mammals. Some of the impacts of massive, sudden...
wipe outmicrobial communitiesdeforestationmarysue
https://spaceref.com/status-report/scientists-find-diverse-microbial-communities-between-antarctic-and-arctic/
Scientists find diverse microbial communities between Antarctic and Arctic - SpaceRef
Oct 28, 2012 - Space news and reference site.
microbial communitiesscientistsfinddiverseantarctic
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2023.1249471/full
Frontiers | Responses of soil microbial communities and enzyme activities under nitrogen addition...
This research investigates the impact of long-term N addition on fluvo-aquic and black soils in north China, with a focus on soil microbial communities and e...
microbial communities
https://pmc.ncbi.nlm.nih.gov/articles/PMC11051731/
Microbial Communities in Changing Aquatic Environments - PMC
microbial communitiesaquatic environmentschangingpmc
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2023.1205759/full
Frontiers | Editorial: Microbial communities from geothermal fields: recent advances on...
Geothermal fields are unique habitats that provide a glimpse into the world of extreme environments and the fascinating microbial communities that inhabit th...
microbial communitiesfrontierseditorialgeothermalfields
https://pmc.ncbi.nlm.nih.gov/articles/PMC8533511/
Role of Food Antioxidants in Modulating Gut Microbial Communities: Novel Understandings in...
Dietary components have an important role on the structure and function of host gut microbial communities. Even though, various dietary components, such as...
food antioxidantsmicrobial communitiesrole
https://asm.org/press-releases/2025/december/flour-choice-shapes-sourdough-microbial-communitie
Flour Choice Shapes Sourdough Microbial Communities | ASM.org
Researchers at North Carolina State University analyzed sourdough starters to understand how flour type changes the microbial composition.
microbial communitiesflourchoiceshapessourdough
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2016.01353/full
Frontiers | Primary Succession of Nitrogen Cycling Microbial Communities Along the Deglaciated...
Structural succession and its driving factors for nitrogen (N) cycling microbial communities during the early stages of soil development (0 to 44 years) were...
primary successionnitrogen cyclingmicrobial communitiesfrontiers
https://www.mdpi.com/2073-4441/13/9/1157
Characterization of the Spatial Variation of Microbial Communities in a Decentralized Subtropical...
Septic tanks (STs), up-flow anaerobic filters (UAFs), and horizontal-flow constructed wetlands (HFCWs) are cost-effective wastewater treatment technologies...
of themicrobial communitiescharacterizationspatialvariation
https://www.gu.se/en/event/halvtidsseminarium-thanh-nguyen-duc
Halftime seminar: "Microbial communities in recirculating aquaculture systems in relation to water...
Focus for Thanh's PhD-project is the role of microbial communities in maintaining water quality in fish aquaculture, and the impact on the fish, see more...
microbial communitiesaquaculture systemshalftimeseminar
https://www.santafe.edu/events/trade-offs-in-auxotrophy-dependencies-in-complex-microbial-communities
Trade-offs in Auxotrophy Dependencies in Complex Microbial Communities | Santa Fe Institute
Microbial communities exploit and compete for resources, often in complex ways that require the exchange of nutrients and co-factors. An important factor...
trade offsmicrobial communitiessanta feauxotrophydependencies
https://www.proquest.com/docview/2183250091?pq-origsite=gscholar
Microbial Communities in Marine Sediments Affecting and Effecting Biogeochemical Cycling: Influence...
Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.
microbial communitiesmarine sedimentsbiogeochemical cycling
https://www.frontiersin.org/research-topics/21875/microbial-communities-and-functions-contribute-to-plant-performance-under-various-stresses/magazine
Microbial Communities and Functions Contribute to Plant Performance under Various Stresses |...
Plants are the key players in terrestrial ecosystems. Since the plants conquered the land, they have been subjected to various stresses such as drought,...
microbial communitiesplant performancefunctionscontribute
https://www.frontiersin.org/research-topics/28860/microbial-communities-from-geothermal-fields-recent-advances-on-characterization-interaction-with-the-environment-and-potential-applications-in-biotechnology/magazine
Microbial Communities from Geothermal Fields: Recent Advances on Characterization, Interaction with...
Geothermal fields around the world, including pools, ponds, springs, and fumaroles of different temperatures, present different physical and geochemical...
microbial communitiesgeothermalfields
https://www.proquest.com/docview/1285532010
Complex interactions between marine sponges and their symbiotic microbial communities - ProQuest
Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.
microbial communitiescomplexinteractionsmarinesponges
https://pmc.ncbi.nlm.nih.gov/articles/PMC7379959/
Nutrient cycling potential within microbial communities on culturally important stoneworks - PMC
Previous studies on microbes associated with deterioration of cultural heritage (CH) stoneworks have revealed a diverse microbiota adapted to stresses such as...
nutrient cyclingmicrobial communitiespotentialwithin
https://www.omicsonline.org/proceedings/comparison-of-the-microbial-communities-of-two-bioreactors-treating-metal-mine-tailing-seepage-water-with-different-efficiencies-12191.html
Comparison Of The Microbial Communities Of Two Bioreactors Treating Metal Mine Tailing Seepage...
In this study by using next generation sequencing techniques ,we investigate the microbial community structures of two anaerobic bioreactors (S8 and S5)...
of themicrobial communities
https://openreview.net/forum?id=vBJZ93tvoE&referrer=%5Bthe%20profile%20of%20Albane%20Ruaud%5D(%2Fprofile%3Fid%3D~Albane_Ruaud1)
Modelling Microbial Communities with Graph Neural Networks | OpenReview
Understanding the interactions and interplay of microorganisms is a great challenge with many applications in medical and environmental settings. In this work,...
graph neural networksmicrobial communitiesmodellingopenreview
https://www.bas.ac.uk/data/our-data/publication/protozoa-in-the-microbial-communities-of-maritime-antarctic-fellfields/
Protozoa in the microbial communities of Maritime Antarctic fellfields - British Antarctic Survey
in themicrobial communitiesprotozoa
https://openreview.net/forum?id=cXs5md5wAq
Modelling Microbial Communities with Graph Neural Networks | OpenReview
Understanding the interactions and interplay of microorganisms is a great challenge with many applications in medical and environmental settings. In this work,...
graph neural networksmicrobial communitiesmodellingopenreview
https://www.muni.cz/vyzkum/publikace/1857019
Microbial Communities in Underground Gas Reservoirs Offer Promising Biotechnological Potential |...
microbial communitiesundergroundgasreservoirsoffer
https://elifesciences.org/articles/55650
Stochastic logistic models reproduce experimental time series of microbial communities | eLife
Properties of various microbial communities time series, such as the noise color and neutrality, are captured by stochastic generalized Lotka-Volterra...
logistic modelstime seriesmicrobial communitiesstochasticreproduce
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1386120/full
Frontiers | Assessment of microbial communities from cold mine environments and subsequent...
Mining activities, even in arctic regions, create waste materials releasing metals and metalloids, which have an impact on the microorganisms inhabiting thei...
microbial communitiesfrontiersassessment
https://www.ornl.gov/publication/distinct-depth-discrete-profiles-microbial-communities-and-geochemical-insights
Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the...
Microbial assembly and metabolic potential in the subsurface critical zone (SCZ) are substantially impacted by subsurface geochemistry and hydrogeology,...
microbial communities
https://www.collinslaboratory.com/
Microbial Communities | Collins Lab | NUI Galway
Gavin Collins. Research group, NUI Galway (nuigalway.ie), Galway, Ireland. Microbiology and microbial ecology. Collins Lab.
microbial communitiescollinslabnuigalway
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1480982/full
Frontiers | Editorial: Microbial communities of traditional fermented beverages: physiology,...
The interest in preserving traditional fermentation processes, which give products a regional character and differentiate them by their unique characteristic...
microbial communitiesfermented beveragesfrontierseditorialtraditional
https://asm.org/reports/microbial-communities-from-life-apart-to-life-toge
Microbial Communities: From Life Apart to Life Together | ASM.org
This report from the Academy discusses the role of microbial communities in human health, industrial processes and ecological functions and makes...
microbial communitiesfrom lifeaparttogetherasm
https://www.southampton.ac.uk/courses/2029-30/modules/biol3057
Biofilms and Microbial Communities | BIOL3057 | University of Southampton
This module aims to provide an understanding of bacterial biofilms and the environmental, industrial and health care problems related to complex microbial...
microbial communitiesuniversity ofbiofilmssouthampton
https://www.southampton.ac.uk/courses/2030-31/modules/biol3057
Biofilms and Microbial Communities | BIOL3057 | University of Southampton
This module aims to provide an understanding of bacterial biofilms and the environmental, industrial and health care problems related to complex microbial...
microbial communitiesuniversity ofbiofilmssouthampton
https://www.usgs.gov/publications/carbonate-hosted-microbial-communities-are-prolific-and-pervasive-methane-oxidizers
Carbonate-hosted microbial communities are prolific and pervasive methane oxidizers at geologically...
At marine methane seeps, vast quantities of methane move through the shallow subseafloor, where it is largely consumed by microbial communities. This process...
microbial communities
https://www.frontiersin.org/journals/energy-research/articles/10.3389/fenrg.2024.1383513/full
Frontiers | Editorial: Microbial communities for bioenergy recovery from wastes and waste streams
As we navigate the challenges posed by a rapidly growing global population, resulting in a surge in waste generation, coupled with an ongoing energy crisis, ...
microbial communities
https://www.mdpi.com/journal/applsci/special_issues/microbial_communities_cultural_heritage
Applied Sciences | Special Issue : Microbial Communities in Cultural Heritage and Their Control
Applied Sciences, an international, peer-reviewed Open Access journal.
applied sciencesspecial issuemicrobial communities
https://www.southampton.ac.uk/courses/2026-27/modules/biol6085
Fluxes, Cycles and Microbial Communities | BIOL6085 | University of Southampton
Microorganisms are key players in all the major biogeochemical cycles on Earth. Fluxes, Cycles, and Microbial Communities explores the microbial influence on...
microbial communitiesuniversity offluxescyclessouthampton
https://pmc.ncbi.nlm.nih.gov/articles/PMC12644890/
Functional diversity of soil microbial communities increases with ecosystem development - PMC
Land abandonment is the single largest process of land-use change in the Global North driving succession and afforestation at continental scales, but assessing...
functional diversitymicrobial communitiesecosystem developmentsoil
https://www.data.gov.uk/dataset/52ec9559-a6d9-4fa2-93db-f79a4979b841/soil-microbial-communities-soil-environmental-and-forest-structural-properties-across-old-2018
Soil microbial communities, soil, environmental and forest structural properties across old-growth...
microbial communitiessoilenvironmental
https://openreview.net/forum?id=3Cg94Z1RZj
Modelling Microbial Communities with Graph Neural Networks | OpenReview
Understanding the interactions and interplay of microorganisms is a great challenge with many applications in medical and environmental settings. In this work,...
graph neural networksmicrobial communitiesmodellingopenreview
https://wvutoday.wvu.edu/stories/2023/07/05/to-make-drinking-water-safer-wvu-researcher-investigates-microbial-communities-living-in-pipes
To make drinking water safer, WVU researcher investigates microbial communities living in pipes |...
Emily Garner, assistant professor at the West Virginia University Benjamin M. Statler College of Engineering and Mineral Resources, has launched a five-year...
https://anr.fr/Project-ANR-22-CE45-0019
From single cells to populations and back: optogenetic control of microbial communities | ANR
One of the core challenges in biology is to understand how behavior at the scale of populations and ecosystems emerges from biochemical processes inside single...
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.981747/full
Frontiers | Positive biofilms to control surface-associated microbial communities in a broiler...
In the One Health concept, the use of beneficial bacteria able to form positive biofilms preventing the settlement of undesirable bacteria is a promising sol...
control surface
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.1102013/full
Frontiers | Microbial communities on eelgrass (Zostera marina) thriving in Tokyo Bay and the...
Zostera marina (eelgrass) is classified as one of the marine angiosperms and is widely distributed throughout much of the Northern Hemisphere. The present st...
https://www.preprints.org/manuscript/202406.1861
Soil Microbial Communities and Wine Terroir: Research Gaps and Data Needs[v1] | Preprints.org
Microbes found in soil can have a significant impact on the taste and quality of wine, also referred to as wine terroir. To date, wine terroir has been thought...
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1463817/full
Frontiers | Effect of fit-for-purpose biochars on rumen fermentation, microbial communities, and...
Biochar has gained attention as a possible antimethanogenic supplement for ruminants. However, the effects of biochars on rumen methanogenesis are variable a...
fit for purpose
https://www.mdpi.com/2071-1050/12/14/5617
Response of Soil Microbial Communities to Warming and Clipping in Alpine Meadows in Northern Tibet
In order to explore responses of soil microbial communities among different alpine meadows under warming and clipping, soil microorganisms of three alpine...
https://pmc.ncbi.nlm.nih.gov/articles/PMC11585282/
Assembly of functional microbial ecosystems: from molecular circuits to communities - PMC
Microbes compete and cooperate with each other via a variety of chemicals and circuits. Recently, to decipher, simulate, or reconstruct microbial communities,...
assemblyfunctionalmicrobialecosystems
https://pmc.ncbi.nlm.nih.gov/articles/PMC3806256/
Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and...
Microbes exist in a range of metabolic states (for example, dormant, active and growing) and analysis of ribosomal RNA (rRNA) is frequently employed to...
https://theoceancleanup.com/scientific-publications/microbial-communities-on-plastic-particles-in-surface-waters-differ-from-subsurface-waters-of-the-north-pacific-subtropical-gyre/
Microbial communities on plastic particles in surface waters differ from subsurface waters of the...
https://pmc.ncbi.nlm.nih.gov/articles/PMC2937523/
From Structure to Function: the Ecology of Host-Associated Microbial Communities - PMC
Summary: In the past several years, we have witnessed an increased interest in understanding the structure and function of the indigenous microbiota that...
the ecology
https://www.universiteitleiden.nl/onderzoek/onderzoeksoutput/wiskunde-en-natuurwetenschappen/microbial-communities-in-pampa-soils-impact-of-landuse-and-climatic-conditions
Microbial communities in Pampa soils; impact of land use changes, soil type and climatic conditions...
Promotor: J.A. van Veen, Co-promotor: E.E. Kuramae
https://www.frontiersin.org/journals/marine-science/articles/10.3389/fmars.2023.1119331/full
Frontiers | Differential impact of two major polychaete guilds on microbial communities in marine...
Even though sediment macrofauna are widespread in the global seafloor, the influence of these fauna on microbial communities that drive sediment biogeochemic...
https://www.gov.uk/government/publications/molecular-data-generation-and-preliminary-analysis-of-river-microbial-biofilm-communities
Molecular data generation and preliminary analysis of river microbial biofilm communities - GOV.UK
This project generated a DNA-based dataset that captures genetic information from microbial biofilm communities in English rivers.
https://pmc.ncbi.nlm.nih.gov/articles/PMC6646062/
The structure of dental plaque microbial communities in the transition from health to dental caries...
The human oral cavity harbors diverse communities of microbes that live as biofilms: highly ordered, surface-associated assemblages of microbes embedded in an...
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1463144/full
Frontiers | New insights into the structure and function of microbial communities in Maxwell Bay,...
The microbial communities inhabiting polar ecosystems, particularly in Maxwell Bay, Antarctica, play a pivotal role in nutrient cycling and ecosystem dynamic...
https://www.ornl.gov/publication/responses-vascular-plant-fine-roots-and-associated-microbial-communities-whole
Responses of vascular plant fine roots and associated microbial communities to whole-ecosystem...
https://www.utwente.nl/en/itc/events/2025/7/453631/phd-defence-yiwei-duan-mapping-phyllosphere-microbial-communities-of-temperate-european-forests-using-environmental-dna-and-remote-sensing
PhD Defence Yiwei Duan | Mapping phyllosphere microbial communities of temperate European forests...
Mapping phyllosphere microbial communities of temperate European forests using environmental DNA and remote sensing
phd defence
https://pmc.ncbi.nlm.nih.gov/articles/PMC7423369/
Ozone affects plant, insect, and soil microbial communities: A threat to terrestrial ecosystems and...
Elevated levels of ground-level ozone threaten terrestrial ecosystems and biodiversity.
https://www.usgs.gov/data/microbial-communities-across-a-successional-gradient-indiana-dunes-national-park-2015-2017
Microbial Communities Across a Successional Gradient at Indiana Dunes National Park, 2015-2017 |...
This soil and vegetation data were collected along a successional gradient at the Indiana Dunes National Park. Soil samples were processed for standard soil...
indiana dunes national park