nucleosome - Robuta Search

https://www.scienceblogs.com/transcript/2006/08/08/nucleosome-binding-sites-1 Nucleosome Binding Sites | ScienceBlogs A paper from a week or so, describes a method for detecting regions in the genome where DNA wrapping takes place. So what (you may asked) is DNA wrapped... binding sites nucleosome scienceblogs https://www.rcsb.org/structure/8GUK RCSB PDB - 8GUK: Human nucleosome core particle (free form) Human nucleosome core particle (free form) nucleosome core particle rcsb pdb human free form https://www.ncbi.nlm.nih.gov/Structure/pdb/7NKX 7NKX: RNA polymerase II-Spt4/5-nucleosome-Chd1 structure Chromatin elongation factor SPT4Chromo domain-containing protein 1DNA (128-MER)DNA (139-MER)DNA-directed RNA polymerase II subunit RPB1DNA-directed RNA... rna polymerase ii 5 nucleosome chd1 structure https://elifesciences.org/articles/16970 A computational approach to map nucleosome positions and alternative chromatin states with base... Computational analysis of MNase-seq data reveals that alternatively positioned nucleosomes are prevalent in both yeast and human cells and create significant... https://www.wikidata.org/wiki/Q27931306 Architecture of the SWI/SNF-nucleosome complex - Wikidata of the swi snf architecture nucleosome complex https://elifesciences.org/articles/06845v1 H2A histone-fold and DNA elements in nucleosome activate SWR1-mediated H2A.Z replacement | eLife https://elifesciences.org/articles/87989/peer-reviews Peer review in Binding to nucleosome poises human SIRT6 for histone H3 deacetylation | eLife The dynamics of Sirtuin 6 binding to the nucleosome shed light on how it is able to deacetylate histone H3 lysines close to the core, including K27. https://www.ncbi.nlm.nih.gov/Structure/pdb/8COM 8COM: Structure of the Nucleosome Core Particle from Trypanosoma brucei Histone H2AHistone H2BHistone H3, putativeHistone H4Widom 601 145 bp DNA (127-mer ordered and built) nucleosome core particle of the 8com structure trypanosoma https://elifesciences.org/articles/25782/peer-reviews Peer review in Crosstalk within a functional INO80 complex dimer regulates nucleosome sliding |... Regulation of the INO80 chromatin remodelling complex differs from those identified in other chromatin remodellers and involves a C-terminal domain of the... https://www.rcsb.org/structure/8U5H RCSB PDB - 8U5H: Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome https://elifesciences.org/articles/54449 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement | eLife The structure of the yeast RSC complex, a member of the SWI/SNF chromatin remodeling family, determined by cryo-electron microscopy, reveals a conserved... https://pmc.ncbi.nlm.nih.gov/articles/PMC2111545/ Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent... We describe the results of a systematic study, using electron microscopy, of the effects of ionic strength on the morphology of chromatin and of H1-depleted... histone h1 in the involvement https://elifesciences.org/articles/95514v1 Dependence of nucleosome mechanical stability on DNA mismatches | eLife The mechanical stability of a nucleosome is enhanced upon the introduction of a single base pair mismatch that makes DNA more bendable, with implications on... dependence nucleosome mechanical stability dna https://elifesciences.org/reviewed-preprints/88936 Detection of new pioneer transcription factors as cell-type specific nucleosome binders transcription factors https://elifesciences.org/reviewed-preprints/86721v2/figures Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases https://www.ncbi.nlm.nih.gov/Structure/pdb/8IEJ 8IEJ: RNF20-RNF40/hRad6A-Ub/nucleosome complex DNA (147-MER)E3 ubiquitin-protein ligase BRE1AE3 ubiquitin-protein ligase BRE1BHistone H2A type 1-B/EHistone H2B type 1-KHistone H3.1Histone... rnf20 rnf40 ub nucleosome complex https://elifesciences.org/articles/71420 Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome | eLife Analysis of conformational heterogeneity in cryo-EM data by a recently developed deep learning method reveals the structure and dynamics of the oncogenic... structure and dynamics https://elifesciences.org/articles/06845/peer-reviews Peer review in H2A histone-fold and DNA elements in nucleosome activate SWR1-mediated H2A.Z... Specific elements of the canonical nucleosome are recognized by the multi-component SWR1 chromatin remodeler for ATP-dependent replacement of H2A-H2B dimers... https://www.ncbi.nlm.nih.gov/Structure/pdb/6T7D 6T7D: Structure of human Sox11 transcription factor in complex with a nucleosome DNA (151-MER)Histone H2A type 1-B/EHistone H2B type 1-KHistone H3.2Histone H4Transcription factor SOX-11 transcription factor https://elifesciences.org/reviewed-preprints/86721v1 Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases https://elifesciences.org/articles/06845/figures Figures and data in H2A histone-fold and DNA elements in nucleosome activate SWR1-mediated H2A.Z... Specific elements of the canonical nucleosome are recognized by the multi-component SWR1 chromatin remodeler for ATP-dependent replacement of H2A-H2B dimers... https://www.rcsb.org/structure/8YBJ RCSB PDB - 8YBJ: Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA... Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA sequence https://elifesciences.org/articles/87989v1 Binding to nucleosome poises human SIRT6 for histone H3 deacetylation | eLife The dynamics of Sirtuin 6 binding to the nucleosome shed light on how it is able to deacetylate histone H3 lysines close to the core, including K27. histone h3 binding nucleosome poises human https://www.rcsb.org/structure/6UPH RCSB PDB - 6UPH: Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution https://elifesciences.org/articles/58394v1 Effective dynamics of nucleosome configurations at the yeast PHO5 promoter | eLife effective dynamics nucleosome configurations https://elifesciences.org/articles/45472v1 Asymmetry between the two acidic patches dictates the direction of nucleosome sliding by the ISWI... https://www.osti.gov/pages/biblio/1558001-extracting-collective-motions-underlying-nucleosome-dynamics-via-nonlinear-manifold-learning Extracting collective motions underlying nucleosome dynamics via nonlinear manifold learning... The U.S. Department of Energy's Office of Scientific and Technical Information extracting collective motions underlying nucleosome https://elifesciences.org/articles/78866 Nucleosome conformation dictates the histone code | eLife histone code nucleosome conformation elife https://www.ncbi.nlm.nih.gov/Structure/pdb/8VFX 8VFX: Cryo-EM structure of 186bp ALBN1 nucleosome aided by scFv DNA (158-MER)Histone H2A type 1-B/EHistone H2B type 1-JHistone H3.1Histone H4scFv cryo em structure https://www.ncbi.nlm.nih.gov/Structure/pdb/1ID3 1ID3: CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN... HISTONE H2A.1HISTONE H2B.2HISTONE H3HISTONE H4PALINDROMIC 146BP DNA FRAGMENTMANGANESE (II) ION nucleosome core particle https://www.rcsb.org/structure/8HQY RCSB PDB - 8HQY: Cryo-EM structure of SSX1 bound to the H2AK119Ub nucleosome at a resolution of... Cryo-EM structure of SSX1 bound to the H2AK119Ub nucleosome at a resolution of 3.05 angstrom https://pmc.ncbi.nlm.nih.gov/articles/PMC6596926/ BAF53b, a Neuron-Specific Nucleosome Remodeling Factor, Is Induced after Learning and Facilitates... Although epigenetic mechanisms of gene expression regulation have recently been implicated in memory consolidation and persistence, the role of... nucleosome remodeling factor https://elifesciences.org/articles/09008v1/peer-reviews Peer review in Promoter nucleosome dynamics regulated by signaling through the CTD code | eLife https://www.scirp.org/journal/paperinformation?paperid=46196 Histone Chaperones: Functions beyond Nucleosome Deposition Discover the crucial role of histone chaperones in gene regulation, DNA replication, repair, and transcription. Explore their potential as therapeutic targets... histone chaperones functions beyond nucleosome https://www.rcsb.org/structure/7K7G RCSB PDB - 7K7G: nucleosome and Gal4 complex nucleosome and Gal4 complex rcsb pdb nucleosome gal4 complex https://www.ncbi.nlm.nih.gov/Structure/pdb/6LER 6LER: 169 bp nucleosome harboring non-identical cohesive DNA termini DNA (169-MER)Histone H2A type 1-B/EHistone H2B type 1-JHistone H3.1Histone H4CALCIUM IONPOTASSIUM ION 169 bp nucleosome harboring non https://www.muni.cz/en/research/publications/2383603 Multivalency of nucleosome recognition by LEDGF | Masaryk University | MUNI masaryk university multivalency nucleosome recognition muni https://elifesciences.org/articles/57663 Diverse nucleosome Site-Selectivity among histone deacetylase complexes | eLife By analyzing five purified recombinant histone deacetylase complexes and designer acetylated mononucleosome substrates, the molecular basis of the unusual... histone deacetylase diverse nucleosome site selectivity https://www.rcsb.org/structure/8JL9 RCSB PDB - 8JL9: Cryo-EM structure of the human nucleosome with scFv Cryo-EM structure of the human nucleosome with scFv rcsb pdb cryo em https://www.ncbi.nlm.nih.gov/Structure/pdb/7JOA 7JOA: 2:1 cGAS-nucleosome complex Cyclic GMP-AMP synthaseDNA (145-MER)Histone H2A type 1Histone H2B type 1-C/E/F/G/IHistone H3.2Histone H4ZINC ION 2 1 cgas nucleosome complex https://elifesciences.org/articles/48281 High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier |... Direct observation of RNA Polymerase II transcription through a single nucleosome at near basepair resolution suggests a mechanism for selective control of... high resolution of the accuracy topographic https://www.wikidata.org/wiki/Q33718829 Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a... https://www.wikidata.org/wiki/Q28300498 Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome - Wikidata https://www.wikidata.org/wiki/Q51576713 ChIP-Seq data reveal nucleosome architecture of human promoters - Wikidata scientific article published in November 2007 chip seq data reveal nucleosome architecture human https://elifesciences.org/reviewed-preprints/89032v3 Vacuolar H+-ATPase Determines Daughter Cell Fates through Asymmetric Segregation of the Nucleosome... vacuolar h atpase https://www.scirp.org/journal/papercitationdetails?paperid=64289&JournalID=164 A Simple Method to Produce Sub-Nucleosome Complexes of High Purity iIn Vitro/i With the identification of increasing number of chromatin modifiers, histone variants, histone post-translational modifications and their cross-talk, it is... https://www.ncbi.nlm.nih.gov/Structure/pdb/7XFJ 7XFJ: Structure of nucleosome-AAG complex (T-50I, post-catalytic state) DNA (152-MER)DNA-3-methyladenine glycosylaseHistone H2A type 1Histone H2B 1.1Histone H3.2Histone H4 structure nucleosome aag https://www.ncbi.nlm.nih.gov/Structure/pdb/8X15 8X15: Structure of nucleosome-bound SRCAP-C in the apo state Actin, cytoplasmic 1, N-terminally processedActin-like protein 6AActin-related protein 6DNA (137-MER)DNA methyltransferase 1-associated protein 1Helicase... in the 8x15 structure nucleosome bound https://elifesciences.org/reviewed-preprints/87989v4/reviews Binding to nucleosome poises human SIRT6 for histone H3 deacetylation histone h3 binding nucleosome poises human https://elifesciences.org/articles/13450 Nucleosome breathing and remodeling constrain CRISPR-Cas9 function | eLife The inhibitory influence of nucleosomes on CRISPR-Cas9 is mitigated by nucleosomal DNA breathing and chromatin remodeling. crispr cas9 nucleosome breathing remodeling constrain https://www.wikidata.org/wiki/Q45988266 Nucleosome linking number change controlled by acetylation of histones H3 and H4. - Wikidata scientific article published in November 1990 acetylation of histones https://elifesciences.org/reviewed-preprints/87989v4 Binding to nucleosome poises human SIRT6 for histone H3 deacetylation histone h3 binding nucleosome poises human https://www.ncbi.nlm.nih.gov/Structure/pdb/8G8B 8G8B: Nucleosome with human nMatn1 sequence in complex with Human Oct4 Histone H2AHistone H2BHistone H3Histone H4POU domain, class 5, transcription factor 1nMatn1 DNA (bottom strand, 168-MER)nMatn1 DNA (top strand,168-MER) nucleosome human sequence complex oct4 https://www.ncbi.nlm.nih.gov/Structure/pdb/5B2J 5B2J: Human nucleosome containing CpG methylated DNA DNA (146-MER)Histone H2A type 1-B/EHistone H2B type 1-JHistone H3.1Histone H4MANGANESE (II) ION human nucleosome containing cpg methylated https://www.rcsb.org/structure/8TXV RCSB PDB - 8TXV: Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone... Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 1) https://elifesciences.org/reviewed-preprints/86721v2/reviews Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases https://elifesciences.org/articles/25782/figures Figures and data in Crosstalk within a functional INO80 complex dimer regulates nucleosome sliding... Regulation of the INO80 chromatin remodelling complex differs from those identified in other chromatin remodellers and involves a C-terminal domain of the... https://www.wikidata.org/wiki/Q69749144 Binding mode of nucleosome-assembly protein (AP-I) and histones - Wikidata scientific article published on 01 January 1987 binding mode nucleosome assembly https://www.wikidata.org/wiki/Q46129118 Histone acetylation reduces nucleosome core particle linking number change - Wikidata scientific article published in May 1989 nucleosome core particle histone acetylation linking number reduces change https://www.ncbi.nlm.nih.gov/Structure/pdb/7OHC 7OHC: Cryo-EM structure of nucleosome core particle composed of the Widom 601 DNA sequence DNA (145-MER)Histone H2AHistone H2B 1.1Histone H3.2Histone H4 https://www.rcsb.org/structure/6ZHY RCSB PDB - 6ZHY: Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's... Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: hexasome class. https://www.ncbi.nlm.nih.gov/Structure/pdb/7COW 7COW: 353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0 DNA (353-MER)Histone H1.0Histone H2A type 1-B/EHistone H2B type 1-JHistone H3.1Histone H4CALCIUM IONCHLORIDE IONPOTASSIUM ION https://elifesciences.org/articles/54449v1 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement | eLife https://www.wikidata.org/wiki/Q39471038 A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by... scientific article published on November 1, 1995 https://www.wikidata.org/wiki/Q33939546 Rat liver HMG1: a physiological nucleosome assembly factor - Wikidata scientific article published on May 1, 1984 rat liver physiological nucleosome assembly https://elifesciences.org/articles/23203 Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in... A new method that measures multiple aspects of chromatin organization in single cells has a possible application to study regulatory processes in heterogeneous... dna methylation simultaneous measurement chromatin accessibility https://www.ncbi.nlm.nih.gov/Structure/pdb/8SN5 8SN5: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub... DNA (147-MER)E3 ubiquitin-protein ligase RNF168Histone H2A type 1-B/EHistone H2B type 1-JHistone H3.1Histone H4Polyubiquitin-BUbiquitin-conjugating enzyme E2 D3 https://www.rcsb.org/structure/8SYP RCSB PDB - 8SYP: Genomic CX3CR1 nucleosome Genomic CX3CR1 nucleosome rcsb pdb genomic cx3cr1 nucleosome https://www.rcsb.org/structure/6R0C RCSB PDB - 6R0C: Human-D02 Nucleosome Core Particle with biotin-streptavidin label Human-D02 Nucleosome Core Particle with biotin-streptavidin label nucleosome core particle rcsb pdb https://elifesciences.org/articles/09008v1/figures Figures and data in Promoter nucleosome dynamics regulated by signaling through the CTD code | eLife https://pmc.ncbi.nlm.nih.gov/articles/PMC6173309/ The interaction landscape between transcription factors and the nucleosome - PMC Nucleosomes cover most of the genome and are thought to be displaced by transcription factors (TFs) in regions that direct gene expression. However, the modes... transcription factors interaction landscape nucleosome pmc https://www.rcsb.org/structure/2NQB RCSB PDB - 2NQB: Drosophila Nucleosome Structure Drosophila Nucleosome Structure rcsb pdb drosophila nucleosome structure https://www.mdpi.com/1422-0067/24/5/4939 The Role of Histone Modification in DNA Replication-Coupled Nucleosome Assembly and Cancer Histone modification regulates replication-coupled nucleosome assembly, DNA damage repair, and gene transcription. Changes or mutations in factors involved in... https://elifesciences.org/articles/58394/figures Figures and data in Effective dynamics of nucleosome configurations at the yeast PHO5 promoter |... The integration of multi-nucleosome configuration data with histone turnover and new chromatin accessibility data by systematically investigated 'regulated... https://www.rcsb.org/structure/6LA8 RCSB PDB - 6LA8: 349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone... 349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 https://elifesciences.org/articles/10051 Stepwise nucleosome translocation by RSC remodeling complexes | eLife Single molecule FRET reveals that the SWI/SNF-family remodeling enzyme RSC translocates nucleosomes along the DNA in steps of ~1-2 base pairs in size. stepwise nucleosome translocation rsc remodeling https://www.rcsb.org/structure/6YOV RCSB PDB - 6YOV: OCT4-SOX2-bound nucleosome - SHL+6 OCT4-SOX2-bound nucleosome - SHL+6 rcsb pdb oct4 sox2 bound nucleosome https://volition.com/ Volition - Early Diagnosis and Nucleosome Quantification May 15, 2026 - Revolutionizing early diagnosis and monitoring of life-altering diseases. Driving the future of epigenetics through nucleosome quantification. early diagnosis volition nucleosome quantification https://www.wikidata.org/wiki/Q40861248 Decoding the nucleosome - Wikidata scientific article published on October 1993 decoding nucleosome wikidata